View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17943_low_25 (Length: 255)
Name: NF17943_low_25
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_low_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 44955536 - 44955773
Alignment:
| Q |
1 |
tgctctcataactataaccataattaattcattgctaagatttaatgtttacaaggaaatacgacaaaaataatgctaataaaattgttaagctgtaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44955536 |
tgctctcataactataaccataattaattcattgctaagatttaatgtttacaaggaaatacgacaaaaataatgctaataaaattgttaagctgtaatt |
44955635 |
T |
|
| Q |
101 |
aaagtataaaagtttcattcatctatttatatatgtgggagtttttaacgacgattatttgatctatctataaaaatggacatttaaaattgatgatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44955636 |
aaagtataaaagtttcattcatctatttatatatgtgggagtttttaacgacgattatttgatctatctataaaaatggacatttaaaattgatgatttt |
44955735 |
T |
|
| Q |
201 |
tattatgagttagaacaatttttataatacttgacatg |
238 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44955736 |
tatgatgagttagaacaatttttataatacttgacatg |
44955773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University