View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_low_28 (Length: 250)
Name: NF17943_low_28
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 57 - 238
Target Start/End: Original strand, 42846749 - 42846928
Alignment:
| Q |
57 |
ttgcctggcattctcttatccagttaggtatttctatagcaaacggtgctgttttataggaaattttgaactctattcctcacaa---tacgatgtggga |
153 |
Q |
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| T |
42846749 |
ttgcctggcattctcttatccagttaggtatttctacagcaaacggtgctgttttataggaaattttgaactctattcctcacaactctacaatgtggga |
42846848 |
T |
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| Q |
154 |
cttaatgtttgaaagcttaaaactgaattagagcattatgctgtctgtcaagtgatttttattctattctattactccctccctc |
238 |
Q |
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| T |
42846849 |
ct--atgtttgaa---ttaaaaatgaattagagcattatgctgtctgtcaagtgatttttattctattctattattccctccctc |
42846928 |
T |
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