View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_low_31 (Length: 238)
Name: NF17943_low_31
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_low_31 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 48752992 - 48752773
Alignment:
| Q |
17 |
cttctcacagaggtgagaaccaatgaaacctccggcgccaataatacagattgttatcggcttgattgagttgccgtctagatcaagtcttgttgaagaa |
116 |
Q |
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| T |
48752992 |
cttctcacagaggtgagaaccaatgaaacctccggcgccaataatacagattgttatcggcttgattgagttgccgtctagatcaagtcttgttgaagaa |
48752893 |
T |
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| Q |
117 |
gaaggagaagacatggttgactagtgtcttagttaggtcaaatagtcaaatataaaaccctaatacggtggtgtctaaat-ccctactgatatggtgttg |
215 |
Q |
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| T |
48752892 |
ga---agaagacatggttgactagtgtcttagttaggtcaaatagtcaaatataaaaccctaatacggtggtgtctaaatcccctactgatatggtgttg |
48752796 |
T |
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| Q |
216 |
ttagagttgttgaccagacttcc |
238 |
Q |
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| T |
48752795 |
ttagagttgttgaccagacttcc |
48752773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 49051627 - 49051527
Alignment:
| Q |
17 |
cttctcacagaggtgagaaccaatgaaacctccggcgccaataatacagattgttatcggcttgattgagttgccgtctagatcaagtcttgttgaagaa |
116 |
Q |
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| T |
49051627 |
cttctcacagaggtgagaaccgatgaaacctccagcgccgataatgcagattgttattggcttgattgggttgccatcgagattaagtcttgttgaagaa |
49051528 |
T |
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| Q |
117 |
g |
117 |
Q |
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| T |
49051527 |
g |
49051527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 15580871 - 15581070
Alignment:
| Q |
16 |
acttctcacagaggtgagaaccaatgaaacctccggcgccaataatacagattgttatcggcttgattgagttgccgtctagatcaagtcttgttgaaga |
115 |
Q |
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| T |
15580871 |
acttctcagagaggtgagaaccgatgaaacctccggcgccgataatgcagattgttatcggtttgattgggttgctgtcgagatcaagtcgtgttgaaga |
15580970 |
T |
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| Q |
116 |
agaaggagaagacatggttgactagtgtcttagttaggtcaaatagtcaaatataaaaccctaatacggtggtgtctaaatccct-actgatatggtgtt |
214 |
Q |
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| T |
15580971 |
ta---gagaagacatggtggactagtttcttacttag--------gtcaaatataaaaccctaatacggtggtgtctaaaaccctaaataatatggtggt |
15581059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 15565367 - 15565293
Alignment:
| Q |
17 |
cttctcacagaggtgagaaccaatgaaacctccggcgccaataatacagattgttatcggcttgattgagttgcc |
91 |
Q |
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| T |
15565367 |
cttctcacagaggtgagaaccgatgaaacctccggtgctgataatgcagattgttatcggtttgattgggttgcc |
15565293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 15578014 - 15577940
Alignment:
| Q |
17 |
cttctcacagaggtgagaaccaatgaaacctccggcgccaataatacagattgttatcggcttgattgagttgcc |
91 |
Q |
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| T |
15578014 |
cttctcacagaggtgagaaccgatgaaacctccggtgctgataatgcagattgttatcggtttgattgggttgcc |
15577940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 18137070 - 18137209
Alignment:
| Q |
17 |
cttctcacagaggtgagaaccaatgaaacctccggcgccaataatacagattgttatcggcttgattgagttgccgtctagatcaagtcttgttgaagaa |
116 |
Q |
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| T |
18137070 |
cttctcacagaggtgagaaccaatgaaacctccggtgtcgataatgcagattgttatcggcttaattgggttgccatcgagatcaagtcttatt---gaa |
18137166 |
T |
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| Q |
117 |
gaaggagaagacatggttgactagtgtcttagttaggtcaaata |
160 |
Q |
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|||||||||||||| |||||||||| ||||| |||||||||||| |
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| T |
18137167 |
gaaggagaagacat-gttgactagtttcttacttaggtcaaata |
18137209 |
T |
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