View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17943_low_32 (Length: 237)
Name: NF17943_low_32
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_low_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34836474 - 34836696
Alignment:
| Q |
1 |
catctaacgaccaatactctgtccttgcacattctcttcatttaccttcattcatgttagctccttaggaggaagttggggaaagaaagttacaacttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34836474 |
catctaacgaccaatactctgtccttgcacattctcttcatttaccttcattcatgttagctccttaggaggaagttggggaaagaaagttacaacttgg |
34836573 |
T |
|
| Q |
101 |
attgtgccatttttgtatctcatatatgtactccatcgtacacctcaaaaggaagaatggaaaaataaaataaactcataatgtgaaaattataggaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34836574 |
attgtgccatttttgtatctcatatatgtactccatcgtacacctcaaaaggaagaatggaaaaataaaataaactcataatgtgaaaattataggaatg |
34836673 |
T |
|
| Q |
201 |
ttgatgatgttgtattgagaatg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
34836674 |
ttgatgatgttgtattgagaatg |
34836696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University