View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_low_39 (Length: 219)
Name: NF17943_low_39
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 5568944 - 5568754
Alignment:
| Q |
15 |
cctgtgtaatcccaatcccattagcacatattctcaatgtacttcaccaatgttactttgagtcgcaatgcataaatcacaatctccaacaacttctgcc |
114 |
Q |
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| T |
5568944 |
cctgtgtaatcccagtcccattagcacatattctcaatgtacttcaccaatgttactttgagtcgcaatgtataaatcacaatctccaacaacttctgcc |
5568845 |
T |
|
| Q |
115 |
tctgccttaggagaatttgttcaataccatcacaaaaggcattaaaaataaccaaacacttgacactgcattcaaagtaatgagcttcttg |
205 |
Q |
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| T |
5568844 |
tctgccttaggagaatttgttcaataccatcacaaaaggcattaaaaataaccaaacacttgacactgcattcaaagtaatgagcttcttg |
5568754 |
T |
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