View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_low_41 (Length: 201)
Name: NF17943_low_41
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 2504973 - 2505138
Alignment:
| Q |
18 |
atacatgactttaatacacatacattaataatagtttgagaaaatataagtgattaaatatatctatatgtgtcgccgacacaataaaactgaaataa-t |
116 |
Q |
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| T |
2504973 |
atacatgactctaatacacatgcattaataatagtttgagaaaatataagtgattaaatatatctat--gtgtcgccgacacaataaaactgaattaaat |
2505070 |
T |
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| Q |
117 |
taccaatatactattagaagaaataatgaagaagcatataaaagagattttatttatccttagatgtc |
184 |
Q |
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| T |
2505071 |
tatcaatatactattagaagaaacaatgaagaagcatataaaagagattttatttatccttagatgtc |
2505138 |
T |
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Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 2511671 - 2511756
Alignment:
| Q |
100 |
aataaaactgaaataa-ttaccaatatactattagaagaaataatgaagaagcatataaaagagattttatttatccttagatgtc |
184 |
Q |
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|||||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||||| |||||| ||||||||| ||||||||| |
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| T |
2511671 |
aataaaactgaattaagttatcaatatactattagaagaaacaatgaagaagcatataatagagatcttatttatcattagatgtc |
2511756 |
T |
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