View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_low_5 (Length: 531)
Name: NF17943_low_5
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 79 - 494
Target Start/End: Original strand, 45293759 - 45294174
Alignment:
| Q |
79 |
tgatgcgtacaaataggagaacaaaagtatctttgaacatttgtaannnnnnncttgcaaaaggttagtctattctgaaatttttggtcattttccaagg |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45293759 |
tgatgcgtacaaataggagaacaaaagtatctttgaacatttgtaatttttttcttgcaaaaggttagtctattctgaaatttttggtcattttccaagg |
45293858 |
T |
|
| Q |
179 |
cctcaacagtggaaaggataatgaagaatctacgccttgaaatcactcaattgagaaaatctttggaagaatctaggtacttttaccatataactatgtt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45293859 |
cctcaacagtggaaaggataatgaagaatctacgccttgaaatcactcaattgagaaaatctttggaagaatctaggtacttttaccatataactatgtt |
45293958 |
T |
|
| Q |
279 |
gaactcatattcttgtccatcacatagtgatannnnnnnaagctaaaactgcataattcattaatttgcaagaaagtgagtgaaaagggctttgcataca |
378 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45293959 |
gaactcatattcttgtccatcacatagtgatatttttttaagctaaaactgcataattcattaatttgcaagaaagtgagtgaaaagggctttgcataca |
45294058 |
T |
|
| Q |
379 |
gttctatacaaagccctttcacaaatgcttcatgattttctgtgataatgcaagctaaaatgagtaatttcttcactcttatataaatccaaagtcaagt |
478 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45294059 |
gttctatacaaagccctttcacaaatgcttcatgcttttctgtgataatgcaagctaaaatgggtaatttcttcactcttatataaatccaaagtcaagt |
45294158 |
T |
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| Q |
479 |
gtggatattttatagt |
494 |
Q |
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|||||||||||||||| |
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| T |
45294159 |
gtggatattttatagt |
45294174 |
T |
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