View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_low_7 (Length: 467)
Name: NF17943_low_7
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 41 - 450
Target Start/End: Original strand, 22364530 - 22364956
Alignment:
| Q |
41 |
ccttcataagtttgtttaaatacacataagtttcaagattttcacaattcaaacaaactcttaactatgaataagaggttt-----------------ca |
123 |
Q |
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| T |
22364530 |
ccttcataagtttgtttagatacacataagtttcaagattttcacaattcaaacaaactcttaactatgaattagaggtttgatagatggtttcatttca |
22364629 |
T |
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| Q |
124 |
attatcatcatcataaacataaactcttacacaatgaaatgtatagacccaatacacaatgttggcaacaaatttaatgcatagactccaaataataatt |
223 |
Q |
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| T |
22364630 |
attatcatcatcataaacataaactcttacacaatgaaatgtatagacccaatacacaatgttggcaacaaatttaatgaatagactccaaataataatt |
22364729 |
T |
|
| Q |
224 |
taatttcaaacaattgtgagcaaaagattaacaatttgtcatatatatttttcactataaatatatttagaaagaattcagaataaaatattgcacaaag |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
22364730 |
taatttcaaacaattgtgagcaaaagattaacaatttgtcatatatatttgtcactataaatatatttaaaaagaattcaaaataaaatattgcacaaag |
22364829 |
T |
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| Q |
324 |
aagagtcattcctcaaattgattagtgtaactacaaacacaatccctatccctattctaaacttctaaaactgaaaatatcatggtttggtcataaaaaa |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22364830 |
aagagtcattcctcaaattgattagtgtaactacaaacacaatccctatccctattctaaacttccaaaactgaaaatatcatggtttggtcataaaaaa |
22364929 |
T |
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| Q |
424 |
tgtgatatttgaactatgtccaaaaat |
450 |
Q |
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||||||||||||||||||||||||||| |
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| T |
22364930 |
tgtgatatttgaactatgtccaaaaat |
22364956 |
T |
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