View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_low_8 (Length: 447)
Name: NF17943_low_8
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 33504612 - 33504181
Alignment:
| Q |
1 |
tgtgtcctacttaattagtgtatgtttgatttcacttttggaggaggcaaattgattttgttctcgagtagaagtgattataacttcaagctagaatttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33504612 |
tgtgtcctacttaattagtgtatgtttgatttcacttttggaggaggcaaattgattttgttctcgagtagaagtgattataacttaaagctagaatttg |
33504513 |
T |
|
| Q |
101 |
tagcttttgaagagacagttgatttttaattcttcaatccacttttacatgaatgaatccaaacactatcaatttacattcaactcgctttcaacaatca |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |
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| T |
33504512 |
tagcttttgaagagacaattgatttttaattcttcaacccacttttacatgaatgaatccaaactctgtcaatttaccttcaactcgctttcaacaatca |
33504413 |
T |
|
| Q |
201 |
attttacaaaattattttttgtggccacaaaacctaacacatgtttaaccttagtgttac-nnnnnnnnnnnccaggttcttatagaagaatggttctta |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33504412 |
attttacaaaattattttttgtggccacaaaacctaacacatgtttaaccttagtgttacaaaaaaaaaaaaccaggttcttatagaagaatggttctta |
33504313 |
T |
|
| Q |
300 |
tgcttgcacaccattggttgtttgcagcatctaatggtgtaatgtgtaagaactcttcttacaacaagaacccacattacaacttgcattggagattgtc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33504312 |
tgcttgcacaccattggttgtttgcagcatctaatggtgtaatgtgtaagaactcttcttacaacaagaacccacattacaacttgcattggagattgtc |
33504213 |
T |
|
| Q |
400 |
ttacaatgtacctcaaaggaaacatttatctg |
431 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33504212 |
ttacaatgtacctcaaaggaaacatttatctg |
33504181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 10859939 - 10859889
Alignment:
| Q |
59 |
tgttctcgagtagaagtgattataacttcaagctagaatttgtagcttttg |
109 |
Q |
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|||||||| |||||| ||||| |||||| ||||||||||||| |||||||| |
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| T |
10859939 |
tgttctcgggtagaattgattctaacttgaagctagaatttggagcttttg |
10859889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 10860445 - 10860405
Alignment:
| Q |
69 |
tagaagtgattataacttcaagctagaatttgtagcttttg |
109 |
Q |
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||||||||||| | |||| |||||||||||||||||||||| |
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| T |
10860445 |
tagaagtgattctgacttgaagctagaatttgtagcttttg |
10860405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 17862490 - 17862542
Alignment:
| Q |
59 |
tgttctcgagtagaagtgattataacttcaagctagaatttgtagcttttgaa |
111 |
Q |
| |
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||||||| ||||||| ||||| |||||| |||||| ||| ||||||||||||| |
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|
| T |
17862490 |
tgttctcaagtagaattgattttaacttgaagctataatatgtagcttttgaa |
17862542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 2410128 - 2410091
Alignment:
| Q |
14 |
attagtgtatgtttgatttcacttttggaggaggcaaa |
51 |
Q |
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|||||||||||||||||||||||||||| |||| |||| |
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| T |
2410128 |
attagtgtatgtttgatttcacttttggtggagtcaaa |
2410091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 28028837 - 28028877
Alignment:
| Q |
70 |
agaagtgattataacttcaagctagaatttgtagcttttga |
110 |
Q |
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|||| ||| |||||||| ||||||||||||||||||||||| |
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| T |
28028837 |
agaattgactataacttgaagctagaatttgtagcttttga |
28028877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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