View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_low_9 (Length: 422)
Name: NF17943_low_9
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 406
Target Start/End: Complemental strand, 47232390 - 47231995
Alignment:
| Q |
11 |
cacagataaaaacacaaaattataaataaatattatgtagtagaccctccatttgtcactattattcatatttttgttggacatatgcatcatatcatga |
110 |
Q |
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| T |
47232390 |
cacacataaaaacacaaaattatgaataaatattatgcagtagaccctccatttgtcactattattcatatttttg---gacatatgcctcat--catga |
47232296 |
T |
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| Q |
111 |
cgtagatatgagaccaatggcaaaaaca-caatactactatacagaaataaaatatcnnnnnnnnnnn--aagggaaagagataaaaaatattactacat |
207 |
Q |
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| T |
47232295 |
cgtagatatgagaccaatggcaaaaaaaacaatactactataaagaaataaaatatctttgtttttttttaagggaaagagataaaaaatattattacat |
47232196 |
T |
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| Q |
208 |
accaatatcaaactattattcaatgttctttgctaagaaataattttcaagcattaaatttctgannnnnnngttgaaaaagtgataaataaattctata |
307 |
Q |
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| T |
47232195 |
accaatatcaaactattattcaatgttctttgctaagaaataattttcaagcattaaatttctgatttttttgttgaaaaagtgataaataaattctata |
47232096 |
T |
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| Q |
308 |
atgagatggggacaaagggatgatgatgaaatatgaaatagtttaggataaatcata--gtatgatatacacacattaacaaaccaaccttgttgtgcgt |
405 |
Q |
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| T |
47232095 |
atgagatggggacaaagggatgatgatgaaatatgaaatagtttaggataaataatatgatatgatatacaaacattaaccaaccaaccttgttgtgcgt |
47231996 |
T |
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