View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17944_low_4 (Length: 267)

Name: NF17944_low_4
Description: NF17944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17944_low_4
NF17944_low_4
[»] chr4 (4 HSPs)
chr4 (118-252)||(46734560-46734694)
chr4 (130-237)||(55261611-55261718)
chr4 (138-218)||(8081726-8081806)
chr4 (171-237)||(56337951-56338017)
[»] chr5 (3 HSPs)
chr5 (165-237)||(24177234-24177306)
chr5 (130-187)||(35636985-35637042)
chr5 (141-237)||(18893113-18893209)
[»] chr6 (3 HSPs)
chr6 (132-234)||(29824297-29824399)
chr6 (163-237)||(1364693-1364767)
chr6 (138-210)||(29520589-29520661)
[»] chr8 (3 HSPs)
chr8 (120-237)||(7671066-7671183)
chr8 (156-218)||(32095768-32095830)
chr8 (132-206)||(42240302-42240376)
[»] chr1 (2 HSPs)
chr1 (132-233)||(27394051-27394151)
chr1 (181-237)||(48380454-48380510)
[»] chr2 (1 HSPs)
chr2 (118-218)||(33280729-33280829)
[»] chr3 (1 HSPs)
chr3 (155-199)||(30793596-30793640)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 118 - 252
Target Start/End: Original strand, 46734560 - 46734694
Alignment:
Q  118 ataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  46734560 ataacatactcattaataacattcaaactcccatcatagagcttatagacaaatttaaatataattcttattggtggctgaaagctaacaatgtcacttt 46734659  T
Q  218 tttgtatggttctcagagattgttcggaccctttg 252  Q
    | ||||||||| |||||||||||||||||||||||    
T  46734660 tgtgtatggttttcagagattgttcggaccctttg 46734694  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 55261718 - 55261611
Alignment:
Q  130 ttaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttc 229  Q
    |||||||| | |||||| | || | ||||||||| || ||||||||||   ||||||||| ||| |||||||||||||| | ||||||| ||||||||||    
T  55261718 ttaataacgtccaaactacaattagagagcttattgaaaaagttaaattccattcttattcgtggctgaaagctaacaaagccacttttgtgtatggttc 55261619  T
Q  230 tcagagat 237  Q
    ||||||||    
T  55261618 tcagagat 55261611  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 8081806 - 8081726
Alignment:
Q  138 attcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcactttt 218  Q
    |||||| || |||| ||||| ||| |||| || ||||||||||| | || |||||| ||||||||||||||||||| ||||    
T  8081806 attcaagctaccatgatagaacttttagaaaaggttaaatataactttttttggtggctgaaagctaacaatgtcaatttt 8081726  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 56337951 - 56338017
Alignment:
Q  171 gttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat 237  Q
    |||||||||| |||||  ||||| || ||||||||||||| ||||||| | ||||||||||| ||||    
T  56337951 gttaaatatacttctttgtggtggctaaaagctaacaatgccacttttgtttatggttctcaaagat 56338017  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 24177306 - 24177234
Alignment:
Q  165 gacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat 237  Q
    ||||||||||||  ||||||||||||||| |||||||||||||| | ||||||| ||||||||||||||||||    
T  24177306 gacaaagttaaacttaattcttattggtggctgaaagctaacaaagccacttttatgtatggttctcagagat 24177234  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 35637042 - 35636985
Alignment:
Q  130 ttaataacattcaaactcccatcatagagcttatagacaaagttaaatataattctta 187  Q
    ||||||| |||||||||||||||||| || |||| || |||||||| |||||||||||    
T  35637042 ttaataatattcaaactcccatcatatagattatggataaagttaagtataattctta 35636985  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 18893209 - 18893113
Alignment:
Q  141 caaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat 237  Q
    ||||||||||| ||||  ||||| || ||||| ||| |||||||||||||||| ||||| || || || | | ||||| | ||||||||||||||||    
T  18893209 caaactcccattatagctcttatggaaaaagtgaaacataattcttattggtggctgaaggcaaataacgcctcttttgtatatggttctcagagat 18893113  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 29824399 - 29824297
Alignment:
Q  132 aataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctc 231  Q
    ||||| || ||||||||||||||||| ||||| || ||| |||| ||||||||||| |||||| ||||  |||| |||||||||||| | ||||| ||||    
T  29824399 aataatatccaaactcccatcatagatcttatggaaaaaattaagtataattcttaatggtgattgaagactaataatgtcacttttgtatatggctctc 29824300  T
Q  232 aga 234  Q
    |||    
T  29824299 aga 29824297  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 1364767 - 1364693
Alignment:
Q  163 tagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat 237  Q
    ||||||||||||||| | |||| |||||||| || |||||||| |||||||  ||| |||||| |||||| ||||    
T  1364767 tagacaaagttaaatttcattcgtattggtggcttaaagctaaaaatgtcatgtttctgtatgattctcacagat 1364693  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 29520661 - 29520589
Alignment:
Q  138 attcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatg 210  Q
    ||||||||| |||| ||||| ||| |||| || ||||||||||| || | |||||| |||||||| |||||||    
T  29520661 attcaaactaccatgatagaacttttagaaaaggttaaatataactcattttggtggctgaaagcaaacaatg 29520589  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 7671183 - 7671066
Alignment:
Q  120 aacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttt 219  Q
    ||||| ||| |||| || ||| |||| || |||| |||| ||||||| || |||||||||||||||||||||||  ||||||| ||||| | |||||||     
T  7671183 aacatgctctttaacaatattgaaaccccaatcaaagagattatagaaaaggttaaatataattcttattggtggttgaaagcaaacaaagccacttttg 7671084  T
Q  220 tgtatggttctcagagat 237  Q
    ||||||||| | ||||||    
T  7671083 tgtatggttttaagagat 7671066  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 32095768 - 32095830
Alignment:
Q  156 gagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcactttt 218  Q
    |||||||| || |||||||||| ||||||||||||||  || ||||||||| | |||||||||    
T  32095768 gagcttattgaaaaagttaaatttaattcttattggtagctaaaagctaacgaagtcactttt 32095830  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 42240302 - 42240376
Alignment:
Q  132 aataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaac 206  Q
    |||||||| |||||| |||| ||||| ||  ||||||| |||||||||||||||| |||||  |||| |||||||    
T  42240302 aataacatccaaacttccatgatagatctactagacaaggttaaatataattctttttggttgctgatagctaac 42240376  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 27394051 - 27394151
Alignment:
Q  132 aataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctc 231  Q
    ||||| || ||||||||||||||||| ||||  || |||||||| |||| ||||||||||||  |||| ||||| |||||||||||| | ||||| ||||    
T  27394051 aataatatccaaactcccatcatagatcttag-gaaaaagttaagtatacttcttattggtggttgaaggctaataatgtcacttttgtatatggctctc 27394149  T
Q  232 ag 233  Q
    ||    
T  27394150 ag 27394151  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 48380510 - 48380454
Alignment:
Q  181 attcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat 237  Q
    ||||||||||||| || ||||||||||| | |||| || ||||||||||| ||||||    
T  48380510 attcttattggtggctaaaagctaacaacgccactcttgtgtatggttcttagagat 48380454  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 33280829 - 33280729
Alignment:
Q  118 ataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttt 217  Q
    |||||| |||| ||||||||||||||||||||||  || ||||| | || || |||||| ||||||||| || |||  ||||||||||||| | ||||||    
T  33280829 ataacagactctttaataacattcaaactcccattgtacagcttctggaaaaggttaaagataattcttttttgtggttgaaagctaacaaagccacttt 33280730  T
Q  218 t 218  Q
    |    
T  33280729 t 33280729  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 30793596 - 30793640
Alignment:
Q  155 agagcttatagacaaagttaaatataattcttattggtgactgaa 199  Q
    |||||||||||| |||||||||| | ||||||||||||| |||||    
T  30793596 agagcttatagataaagttaaattttattcttattggtggctgaa 30793640  T

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