View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17945_high_1 (Length: 756)

Name: NF17945_high_1
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17945_high_1
NF17945_high_1
[»] chr7 (1 HSPs)
chr7 (18-743)||(25336290-25337016)


Alignment Details
Target: chr7 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 18 - 743
Target Start/End: Original strand, 25336290 - 25337016
Alignment:
Q  18 tcttcatgttaaattagcccaattatgtcaacttttgcttatggttctattttctctctttgtttatggcttaattgaagtacctttcaaacaacctctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25336290 tcttcatgttaaattagcccaattatgtcaacttttgcttatggttctattttctctctttgtttatggcttaattgaagtacctttcaaacaacctctt 25336389  T
Q  118 ctttcttgtttgcacaaaaataaatttcttaaatatcttatgacattataaagcacaacataaatagtaattttcaaccaaaagaaaaccaaaaagagtt 217  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25336390 ctttcttgtttgcacaaaaataaatttcttaaatatcatatgacattataaagcacaacatcaatagtaattttcaaccaaaagaaaaccaaaaagagtt 25336489  T
Q  218 gaaatttctattttaattttctaatttctaatttgacatctaaatctagctaacttacatttggaagaaaatgaatgacaaaaatgagaacgtacataat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25336490 gaaatttctattttaattttctaatttctaatttgacatctaaatctagctaacttacatttggaagaaaatgaatgacaaaaatgagaaggtacataat 25336589  T
Q  318 ttaaaagatttctcaaaaaacacaaaaggacaaatggggcatacatgaaaatttcaagagnnnnnnnnnnnnnnnnnnnnnnnttatccatgcaactaaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                       |||||||||||||||||    
T  25336590 ttaaaagatttctcaaaaaacacaaaaggacaaatggggcatacatgaaaatttcaagaggaagaaagaagaaagaaagaaagttatccatgcaactaaa 25336689  T
Q  418 agttactatcaaaaaggaaaggagaagttgaaaattgnnnnnnncaatatataaggaagctatcatgtcccactcaatattggaacaacttgcacaaatt 517  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25336690 agttactatcaaaaaggaaaggagaagttgaaaattgaaaaaaacaatatataaggaagctatcatgtcccactcaatattggaacaacttgcacaaatt 25336789  T
Q  518 ttatagcttttgtaaagaggaagaataaaattgttggacttcatttttgtcatatagaagggcattttggtccattatttaaataaacaggcttaaactc 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25336790 ttatagcttttgtaaagaggaagaataaaattgttggacttcatttttgtcatatagaagggcattttggtccattatttaaataaacgggcttaaactc 25336889  T
Q  618 caaacgtgattagtgtgatccttacattcttatttggtagatctttgtgtacattcaatttatgtacatgattccaccttttaaat-aaaaaacaagaga 716  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  25336890 caaacgtgattagtgtgatccttacatttttatttggtagatctttgtgtacattcaatttatgtacataattccaccttttaaataaaaaaacaagaga 25336989  T
Q  717 aaaattcaagattaagaagagtataat 743  Q
    |||||||||||||||||||||||||||    
T  25336990 aaaattcaagattaagaagagtataat 25337016  T

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