View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17945_high_11 (Length: 478)
Name: NF17945_high_11
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 17 - 466
Target Start/End: Original strand, 44827047 - 44827496
Alignment:
| Q |
17 |
tcatatacgagagagaaagtctctttgatggtagtttgaggatggggatcatacctgagaataacattaaaattatgtagatatattcaaatgttttaca |
116 |
Q |
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| T |
44827047 |
tcatatacgagagagaaagtctctttgatggtagtttgaggatggggatcatacctgagaataacattaaaaatatgtagatatattcaaatgttttaca |
44827146 |
T |
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| Q |
117 |
tgttatatttgtttatctgttcacacaacatgcggataaatttattttacattaagtttactaatgctacaagactcattatcttgctttttcgtttgtt |
216 |
Q |
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| T |
44827147 |
tgttatatttgtttatctattcacacaacatgcggataaatttattttacattaagtttactgatgctacaagactcattatcttgctttttcgtttgtt |
44827246 |
T |
|
| Q |
217 |
tgatggtaaaattttttgactaccaattttaatcaaaataatataaatttgattatgttgacctggtccacacaagaataaggacatggagaaaaaactc |
316 |
Q |
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| T |
44827247 |
tgatggttaaattttttgactaccaattttaatcaaaataatagaaatttgatcatgttgacctggtccacacgagaataaggacatggagaaaaaactc |
44827346 |
T |
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| Q |
317 |
ttaaaaataaggaatgatgaacattttgaatgacatagatggggagcggagagtactccccatcccgcctcgttgacgtctccaattccaccacatctca |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44827347 |
ttaaaaataaggaatgatgaacattttgaatgacatagatggggagcggagagtactccccatcccgcctcgttgacgtcttcaattccaccacatctca |
44827446 |
T |
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| Q |
417 |
tatatataactttcacctcatactaatcaaacactcctataaaatatgat |
466 |
Q |
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| T |
44827447 |
tatatataactttcacctcatactaatcaaacactcctataaaatatgat |
44827496 |
T |
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