View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17945_high_12 (Length: 461)

Name: NF17945_high_12
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17945_high_12
NF17945_high_12
[»] chr1 (9 HSPs)
chr1 (15-444)||(35677234-35677663)
chr1 (156-229)||(7218099-7218172)
chr1 (155-228)||(33723406-33723479)
chr1 (157-229)||(26630435-26630507)
chr1 (155-229)||(6231840-6231915)
chr1 (158-229)||(34179899-34179970)
chr1 (155-201)||(34290236-34290282)
chr1 (159-229)||(44032027-44032097)
chr1 (155-229)||(38867855-38867931)
[»] chr7 (13 HSPs)
chr7 (156-229)||(44821931-44822004)
chr7 (157-229)||(12110332-12110404)
chr7 (155-194)||(2825255-2825294)
chr7 (155-226)||(38010689-38010760)
chr7 (151-229)||(29363490-29363568)
chr7 (155-201)||(39345471-39345517)
chr7 (155-229)||(48157144-48157218)
chr7 (156-225)||(28165067-28165136)
chr7 (157-201)||(4966156-4966200)
chr7 (155-195)||(15321808-15321848)
chr7 (157-229)||(17989049-17989121)
chr7 (157-201)||(18516343-18516387)
chr7 (176-228)||(21453267-21453319)
[»] chr3 (10 HSPs)
chr3 (151-200)||(12985365-12985414)
chr3 (156-229)||(37273103-37273179)
chr3 (156-229)||(52618975-52619048)
chr3 (155-231)||(48286834-48286910)
chr3 (156-211)||(24158528-24158583)
chr3 (155-201)||(2719468-2719514)
chr3 (155-229)||(23785227-23785301)
chr3 (164-229)||(33405200-33405265)
chr3 (156-229)||(41452495-41452568)
chr3 (178-238)||(3365368-3365428)
[»] chr4 (7 HSPs)
chr4 (155-229)||(18628567-18628641)
chr4 (156-222)||(20907326-20907392)
chr4 (175-236)||(10192249-10192310)
chr4 (156-238)||(2996536-2996618)
chr4 (151-229)||(3175923-3176001)
chr4 (155-195)||(15969910-15969950)
chr4 (155-227)||(21157742-21157814)
[»] chr2 (10 HSPs)
chr2 (155-229)||(3611198-3611272)
chr2 (155-229)||(11513870-11513944)
chr2 (155-226)||(22681209-22681280)
chr2 (155-229)||(4026789-4026863)
chr2 (156-242)||(36863650-36863736)
chr2 (155-209)||(42817400-42817454)
chr2 (157-227)||(43141845-43141915)
chr2 (158-227)||(35486390-35486459)
chr2 (157-201)||(32821809-32821853)
chr2 (157-201)||(36852472-36852516)
[»] chr8 (8 HSPs)
chr8 (156-229)||(6509328-6509401)
chr8 (171-238)||(787146-787213)
chr8 (161-229)||(13561342-13561410)
chr8 (176-231)||(11415124-11415179)
chr8 (155-201)||(11183545-11183591)
chr8 (155-201)||(30013218-30013264)
chr8 (151-225)||(38537567-38537641)
chr8 (155-208)||(8060662-8060715)
[»] chr5 (11 HSPs)
chr5 (156-243)||(12425529-12425616)
chr5 (155-201)||(32408616-32408662)
chr5 (155-202)||(7319032-7319079)
chr5 (156-210)||(4619698-4619752)
chr5 (151-229)||(4855670-4855748)
chr5 (155-229)||(9202772-9202846)
chr5 (155-229)||(28586790-28586864)
chr5 (155-201)||(32172653-32172699)
chr5 (155-228)||(7319379-7319452)
chr5 (156-201)||(32197720-32197765)
chr5 (160-236)||(18875326-18875402)
[»] chr6 (10 HSPs)
chr6 (151-201)||(19275656-19275706)
chr6 (155-219)||(8365000-8365064)
chr6 (155-195)||(33498625-33498665)
chr6 (151-229)||(2735041-2735119)
chr6 (151-209)||(33500501-33500559)
chr6 (177-229)||(4006686-4006738)
chr6 (155-227)||(18264303-18264375)
chr6 (108-140)||(20861617-20861649)
chr6 (158-226)||(33787772-33787840)
chr6 (156-200)||(33887831-33887875)


Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 15 - 444
Target Start/End: Complemental strand, 35677663 - 35677234
Alignment:
Q  15 atgaacaagtgagctttggaattactgtattatattttgtccaattgtatgattggcaatcataataatagttttgtcattagcggttgagcctgtttgg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35677663 atgaacaagtgagctttggaattactgtattatattttgtccaattgtatgattggcgatcataataatagttttgtcattagcggttgagcctgtttgg 35677564  T
Q  115 tttgtcttatttgagcttacctactgtcgtaagctcttcggcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataa 214  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35677563 tttgtcttatttgagcttatctactgtcgtaagctcttcggcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataa 35677464  T
Q  215 caatttgactttattctgtcttatactattagtacttaattaggctgtttatctaaacaatgtgagttagtttacatacaacttacttttcgtattgaaa 314  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35677463 caatttgactttattctgtcttatactattagtgcttaattaggctgtttatctaaacaatgtgagttagtttacatacaacttacttttcgtattgaaa 35677364  T
Q  315 tcaggtcatacaaggttgattgattcatctggaaaccttccgccagagctatgtcttcgtctattccatcttcctcgatgcaggctgcatcaatcaattc 414  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35677363 tcaggtcatacaaagttgattgattcatctggaaaccttccgccagagctatgtcttcgtctattccatcttcctcgatgcaggctgcatcaatcaattc 35677264  T
Q  415 caatatcagaagtgttggacacatgttttc 444  Q
    ||||||||||||||||||||||||||||||    
T  35677263 caatatcagaagtgttggacacatgttttc 35677234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 7218099 - 7218172
Alignment:
Q  156 cttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    ||||||| |||||||||| |||||||| || ||||||||  |||||  |||||| | |||||||||||||||||    
T  7218099 cttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaacaatttgactttatt 7218172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 33723406 - 33723479
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttat 228  Q
    ||||||||||||||| | | |||| |||||| ||||||||||| |||  |||||| | ||||||||||||||||    
T  33723406 gcttatttccataagctttacagggtagcttatgaaaacagttcatagtttatatgaaaacaatttgactttat 33723479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 26630507 - 26630435
Alignment:
Q  157 ttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    ||||||||||| ||||| ||||||||| | | |||||||||||||  |||||| | |||||||| ||||||||    
T  26630507 ttatttccatatgttctccaggatagcgtatcaaaacagtttatagcttatatgaaaacaattttactttatt 26630435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 6231840 - 6231915
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatat-aataacaatttgactttatt 229  Q
    ||||||||| |||||||||||||| ||||||  |||||||| |||||  |||||| || |||| ||||||||||||    
T  6231840 gcttatttctataagttcttcaggttagcttacgaaaacagcttatagattatatgaaaaacagtttgactttatt 6231915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 34179899 - 34179970
Alignment:
Q  158 tatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    |||||||||||  | |||||||||| || |||||||||||||||  ||| || | |||||||||||||||||    
T  34179899 tatttccataaacttttcaggatagtttatgaaaacagtttatagcttagattaaaacaatttgactttatt 34179970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 34290282 - 34290236
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttata 201  Q
    |||||||| ||||||||||||| |||||||| ||||||||| |||||    
T  34290282 gcttattttcataagttcttcaagatagcttatgaaaacagcttata 34290236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 44032027 - 44032097
Alignment:
Q  159 atttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    ||||||||||| |||||| |||| |||  ||||| ||||||||  |||||| | |||||||||||||||||    
T  44032027 atttccataagctcttcaagataacttaagaaaatagtttatagcttatatgaaaacaatttgactttatt 44032097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 38867855 - 38867931
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatata--ataacaatttgactttatt 229  Q
    |||||||| ||||||||||||| |||| ||| ||||||||||||| |  |||||||  | |||| ||||||||||||    
T  38867855 gcttattttcataagttcttcaagataacttatgaaaacagtttaaagcttatatatgaaaacattttgactttatt 38867931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 44822004 - 44821931
Alignment:
Q  156 cttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    ||||||| |||||||||| ||| ||||||| ||||||||| |||||| ||||| || |||||||||||||||||    
T  44822004 cttattttcataagttctccagaatagcttatgaaaacagcttataacttatacaaaaacaatttgactttatt 44821931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 12110404 - 12110332
Alignment:
Q  157 ttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    |||||| ||||||||||||| |||||||| ||||||||| |||||  |||||  | |||||||||||||||||    
T  12110404 ttattttcataagttcttcaagatagcttatgaaaacagcttatagcttataccaaaacaatttgactttatt 12110332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 2825255 - 2825294
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaaca 194  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  2825255 gcttatttccataagttctctaggatagcttgtgaaaaca 2825294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 38010760 - 38010689
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgacttt 226  Q
    |||||||||||||||||||  ||||||| || ||||||||| |||||  |||||| | ||||||||| ||||    
T  38010760 gcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatttggcttt 38010689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 29363568 - 29363490
Alignment:
Q  151 ttcggcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    ||||| ||||||||||||| ||| ||||||| ||| ||| ||||| |||||| | |||| | |||| ||||||||||||    
T  29363568 ttcgggttatttccataagctctccaggataacttatgataacagcttataactaatatgaaaacagtttgactttatt 29363490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 39345517 - 39345471
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttata 201  Q
    ||||||||||||||| || |||||||||||| ||||||||| |||||    
T  39345517 gcttatttccataaggtcgtcaggatagcttttgaaaacagcttata 39345471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 48157144 - 48157218
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    ||||||||||||||| ||| | | ||||||||||||||||  |||||  |||||| | |||||||| ||||||||    
T  48157144 gcttatttccataagatctcccgaatagcttgtgaaaacaaattatagcttatattaaaacaatttcactttatt 48157218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 28165136 - 28165067
Alignment:
Q  156 cttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactt 225  Q
    |||||||||||||| ||| || |||||||| | || ||||||||||  |||||| | |||||||||||||    
T  28165136 cttatttccataagctctccatgatagcttataaagacagtttatagcttatattaaaacaatttgactt 28165067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 4966200 - 4966156
Alignment:
Q  157 ttatttccataagttcttcaggatagcttgtgaaaacagtttata 201  Q
    ||||||||||||| |||||||||| |||| ||||||||| |||||    
T  4966200 ttatttccataagctcttcaggatggcttatgaaaacagcttata 4966156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 15321808 - 15321848
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacag 195  Q
    ||||||||||||||| | ||||||||||||| |||||||||    
T  15321808 gcttatttccataagcttttcaggatagcttatgaaaacag 15321848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 17989049 - 17989121
Alignment:
Q  157 ttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    |||||| |||||| ||||||||| ||||| ||||||||  |||||  |||||| | |||| ||||||||||||    
T  17989049 ttattttcataagctcttcaggagagcttatgaaaacaaattatagtttatatgaaaacagtttgactttatt 17989121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 18516343 - 18516387
Alignment:
Q  157 ttatttccataagttcttcaggatagcttgtgaaaacagtttata 201  Q
    |||||| |||||||||||||||||| ||| |||||| ||||||||    
T  18516343 ttattttcataagttcttcaggatatcttatgaaaatagtttata 18516387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 21453319 - 21453267
Alignment:
Q  176 aggatagcttgtgaaaacagtttataagttatataataacaatttgactttat 228  Q
    |||||||||| |||||||||||||||  |||||| | ||||| ||||||||||    
T  21453319 aggatagcttatgaaaacagtttatagcttatatgagaacaacttgactttat 21453267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 12985365 - 12985414
Alignment:
Q  151 ttcggcttatttccataagttcttcaggatagcttgtgaaaacagtttat 200  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  12985365 ttcggcttatttccataagttcttgaggatagcttatgaaaacagtttat 12985414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 37273179 - 37273103
Alignment:
Q  156 cttatttccataagttcttcaggatagcttgtgaaaacagtttataag---ttatataataacaatttgactttatt 229  Q
    |||||||||||||||||| || |||||||| |||||||||||||| |    |||||||| |||||||||||||||||    
T  37273179 cttatttccataagttctccaagatagcttatgaaaacagtttattatatcttatataaaaacaatttgactttatt 37273103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 52619048 - 52618975
Alignment:
Q  156 cttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    ||||||| || ||| |||||| |||||||||||||||||| |||||| |||||| | |||||||| ||||||||    
T  52619048 cttattttcacaagctcttcaagatagcttgtgaaaacagcttataacttatatgaaaacaatttaactttatt 52618975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 48286834 - 48286910
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttattct 231  Q
    ||||||||| ||||| ||| || |||| ||| |||||||||||||||| ||||||   |||||||| ||||||||||    
T  48286834 gcttatttctataagctctacatgataacttatgaaaacagtttataacttatatggaaacaatttaactttattct 48286910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 24158528 - 24158583
Alignment:
Q  156 cttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataa 211  Q
    |||||||||||||| ||| ||||||||||| ||||||||| |||| | ||||||||    
T  24158528 cttatttccataagctctccaggatagcttatgaaaacagcttattacttatataa 24158583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 2719514 - 2719468
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttata 201  Q
    |||||||| |||||||||| || |||||||| |||||||||||||||    
T  2719514 gcttattttcataagttctccaagatagcttatgaaaacagtttata 2719468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 23785301 - 23785227
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    |||| |||||||||| ||| || || |||||||||||||||||||||  |||||| |  ||| ||||||||||||    
T  23785301 gcttgtttccataagctctccatgagagcttgtgaaaacagtttatagcttatatgaatacagtttgactttatt 23785227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 33405200 - 33405265
Alignment:
Q  164 cataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    ||||||||||||| |||||||| ||||||||| |||||  |||||| | ||||| || ||||||||    
T  33405200 cataagttcttcaagatagcttatgaaaacagcttatagcttatatgaaaacaaattaactttatt 33405265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 41452568 - 41452495
Alignment:
Q  156 cttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    |||||||||| || |||| ||||||||||| ||||||||| ||| || | |||| | |||| ||||||||||||    
T  41452568 cttatttccacaacttctccaggatagcttatgaaaacagcttacaactaatatgaaaacagtttgactttatt 41452495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 3365428 - 3365368
Alignment:
Q  178 gatagcttgtgaaaacagtttataagttatataataacaatttgactttattctgtcttat 238  Q
    |||||||| ||||||||||||| || |||||||| ||||| ||||||| ||| | ||||||    
T  3365428 gatagcttatgaaaacagtttacaatttatataaaaacaacttgacttaattttatcttat 3365368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 18628567 - 18628641
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    ||||||||||||||| ||| || |||| ||| |||||||||||||||| |||||||| |||| ||||||| ||||    
T  18628567 gcttatttccataagctctccaagataacttatgaaaacagtttataacttatataaaaacagtttgactatatt 18628641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 20907392 - 20907326
Alignment:
Q  156 cttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttga 222  Q
    ||||||| |||  |||||||||||||||||||||||||||||||||  |||||| | ||||||||||    
T  20907392 cttattttcattggttcttcaggatagcttgtgaaaacagtttatagcttatatgaaaacaatttga 20907326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 10192310 - 10192249
Alignment:
Q  175 caggatagcttgtgaaaacagtttataagttatataataacaatttgactttattctgtctt 236  Q
    ||||||||||| ||||||||  |||||| |||||| | ||||||||||||||||||| ||||    
T  10192310 caggatagcttttgaaaacaacttataacttatatgaaaacaatttgactttattctatctt 10192249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 2996618 - 2996536
Alignment:
Q  156 cttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttattctgtcttat 238  Q
    ||||||| |||| | ||| || |||||||| ||||||||  |||||| |||||||| |||||||||||| |||| | ||||||    
T  2996618 cttattttcatacgctctccaagatagcttatgaaaacaacttataacttatataaaaacaatttgactgtattttatcttat 2996536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 3176001 - 3175923
Alignment:
Q  151 ttcggcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    |||| |||||||| | |||  |||||||||||||| ||||||||| |||||| |||  | | |||||||||||||||||    
T  3176001 ttcgacttatttctacaagcccttcaggatagcttatgaaaacagcttataacttacttgaaaacaatttgactttatt 3175923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 15969950 - 15969910
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacag 195  Q
    |||||||||||||||||| ||||||||| || |||||||||    
T  15969950 gcttatttccataagttcatcaggatagtttatgaaaacag 15969910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 21157814 - 21157742
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgacttta 227  Q
    ||||||||||||||| ||||||||||||| | ||||||||  |||||  ||| || | |||| ||||||||||    
T  21157814 gcttatttccataagctcttcaggatagcatatgaaaacatcttatagcttacatgaaaacagtttgacttta 21157742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 3611272 - 3611198
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    |||||||| |||||||||| || ||||||||||||||||||| |||||  |||| || |||||||| ||||||||    
T  3611272 gcttattttcataagttctccaagatagcttgtgaaaacagtctataaactatacaaaaacaatttaactttatt 3611198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 11513944 - 11513870
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    ||||||||||| ||||||| || |||||||| ||||||||  |||||  |||||| | |||||||||||||||||    
T  11513944 gcttatttccaaaagttctccatgatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttatt 11513870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 22681209 - 22681280
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgacttt 226  Q
    |||||||||||||||||||  ||||||| || ||||||||| |||||  |||||| | ||||||||| ||||    
T  22681209 gcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatttggcttt 22681280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 4026863 - 4026789
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    |||||||| ||||||||||||||||||  || ||||||||| |||||| ||||  || || ||||| ||||||||    
T  4026863 gcttattttcataagttcttcaggataatttatgaaaacagcttataatttatgcaaaaataatttaactttatt 4026789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 36863650 - 36863736
Alignment:
Q  156 cttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttattctgtcttatacta 242  Q
    ||||||| |||||| ||| || |||||||| |||||||| ||||||| |||||||| ||   |||||||||||| | |||| |||||    
T  36863650 cttattttcataagctctccaagatagcttatgaaaacaatttataacttatataaaaattgtttgactttattttatcttttacta 36863736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 42817400 - 42817454
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatat 209  Q
    ||||| ||||||||| ||||||| ||||||| |||||||||||||| | ||||||    
T  42817400 gcttacttccataagctcttcagaatagcttatgaaaacagtttattacttatat 42817454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 43141915 - 43141845
Alignment:
Q  157 ttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgacttta 227  Q
    ||||||||||||  ||||||||||||||| ||||||||  |||||  ||||||   |||||||||||||||    
T  43141915 ttatttccataaactcttcaggatagcttatgaaaacatcttatagcttatatggaaacaatttgacttta 43141845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 35486390 - 35486459
Alignment:
Q  158 tatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgacttta 227  Q
    |||||||||||  ||| |||||||||||| |||||||| |||||  ||||| || |||| ||||||||||    
T  35486390 tatttccataacctctccaggatagcttgcgaaaacagcttatagattatacaaaaacagtttgacttta 35486459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 32821853 - 32821809
Alignment:
Q  157 ttatttccataagttcttcaggatagcttgtgaaaacagtttata 201  Q
    ||||||| ||||| |||| |||||||||| |||||||||||||||    
T  32821853 ttatttctataagctctttaggatagcttatgaaaacagtttata 32821809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 36852516 - 36852472
Alignment:
Q  157 ttatttccataagttcttcaggatagcttgtgaaaacagtttata 201  Q
    ||||||||||||| ||| || |||||||| |||||||||||||||    
T  36852516 ttatttccataagctctccaagatagcttatgaaaacagtttata 36852472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 6509328 - 6509401
Alignment:
Q  156 cttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    |||||||| ||||| ||| ||||||||||| ||||||||| |||||  ||||||||  ||||||||||||||||    
T  6509328 cttatttcaataagctctccaggatagcttatgaaaacagcttatagcttatataaatacaatttgactttatt 6509401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 787146 - 787213
Alignment:
Q  171 tcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttattctgtcttat 238  Q
    |||||| |||| ||| |||||||||||||||  |||||| ||||||||||||||||||| | ||||||    
T  787146 tcttcaagataacttatgaaaacagtttatagcttatatgataacaatttgactttattttatcttat 787213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 13561342 - 13561410
Alignment:
Q  161 ttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    ||||||||| |||  | |||||||||||||||||  |||||| |||||| | |||||||||||||||||    
T  13561342 ttccataagctctcaatgatagcttgtgaaaacaagttataatttatatgaaaacaatttgactttatt 13561410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 11415179 - 11415124
Alignment:
Q  176 aggatagcttgtgaaaacagtttataagttatataataacaatttgactttattct 231  Q
    |||||||||| |||||||||  ||||| |||||||| || ||||||||||||||||    
T  11415179 aggatagcttatgaaaacagcgtataacttatataaaaataatttgactttattct 11415124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 11183591 - 11183545
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttata 201  Q
    ||||||||||||||| ||| |||| |||||||||||||||| |||||    
T  11183591 gcttatttccataagctctccagggtagcttgtgaaaacagcttata 11183545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 30013264 - 30013218
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttata 201  Q
    |||||||||||| |||||| ||||||||||| ||||||||| |||||    
T  30013264 gcttatttccattagttctacaggatagcttatgaaaacagcttata 30013218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 38537641 - 38537567
Alignment:
Q  151 ttcggcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactt 225  Q
    |||||||||||||||| |||| |||||||||| || ||||| ||| |||||  ||||| || ||||| |||||||    
T  38537641 ttcggcttatttccatgagtttttcaggatagtttatgaaagcagcttatagattatacaaaaacaaattgactt 38537567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 8060715 - 8060662
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttata 208  Q
    ||||||||||||||| |||  ||||| |||| ||||||||| ||||||||||||    
T  8060715 gcttatttccataagctctctaggattgcttatgaaaacagcttataagttata 8060662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 12425616 - 12425529
Alignment:
Q  156 cttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttattctgtcttatactat 243  Q
    ||||||| |||||||||| || |||||||||||||||||| |||||  |||||  | |||||||| |||||||| | |||| ||||||    
T  12425616 cttattttcataagttctccaagatagcttgtgaaaacagcttatagcttatacgaaaacaatttaactttattttatcttttactat 12425529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 32408616 - 32408662
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttata 201  Q
    ||||||||||||||| ||||||||||||||| |||||| ||||||||    
T  32408616 gcttatttccataagctcttcaggatagcttatgaaaatagtttata 32408662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 7319032 - 7319079
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataa 202  Q
    |||||||| |||||||||| || |||||||| ||||||||||||||||    
T  7319032 gcttattttcataagttctccaagatagcttatgaaaacagtttataa 7319079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 4619752 - 4619698
Alignment:
Q  156 cttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatata 210  Q
    |||||||||||||||||| || |||||||| |||| ||||||||||  |||||||    
T  4619752 cttatttccataagttctccatgatagcttatgaagacagtttatagattatata 4619698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 4855748 - 4855670
Alignment:
Q  151 ttcggcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    |||||||||||||  |||| ||||  |||||| || ||||||||  |||||| |||||| |||||||||| ||||||||    
T  4855748 ttcggcttatttctgtaagctctttgggatagtttatgaaaacaacttataacttatatgataacaatttaactttatt 4855670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 9202772 - 9202846
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    |||||||| ||||||||||||| |||| ||| ||||||||| ||||   |||||| | |||||||| ||||||||    
T  9202772 gcttattttcataagttcttcaagataacttatgaaaacagcttattgcttatatgaaaacaatttaactttatt 9202846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 28586790 - 28586864
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    ||||||||| ||||| |||  ||||||||| || ||||||| |||||| |||||| | |||| ||||||||||||    
T  28586790 gcttatttcgataagctctctaggatagctcgtcaaaacagcttataatttatatgaaaacagtttgactttatt 28586864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 32172699 - 32172653
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttata 201  Q
    |||||||||||| ||||||||| |||||||| ||||||||| |||||    
T  32172699 gcttatttccattagttcttcatgatagcttatgaaaacagcttata 32172653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 7319452 - 7319379
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttat 228  Q
    ||||||||  ||||||||| || ||||||||  ||||||||||||||  |||||| | |||||||| |||||||    
T  7319452 gcttatttttataagttctccaagatagcttacgaaaacagtttatagcttatatgaaaacaatttaactttat 7319379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 32197765 - 32197720
Alignment:
Q  156 cttatttccataagttcttcaggatagcttgtgaaaacagtttata 201  Q
    ||||||| |||||||||||||||||||||| || |||||| |||||    
T  32197765 cttattttcataagttcttcaggatagcttatggaaacagcttata 32197720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 18875402 - 18875326
Alignment:
Q  160 tttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttattctgtctt 236  Q
    |||||||||| ||| ||||||| ||| | ||||||| |||||| || ||| | | ||||||||||||||| ||||||    
T  18875402 tttccataagctctccaggatatcttattaaaacagcttataacttgtatgaaatcaatttgactttattttgtctt 18875326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 19275656 - 19275706
Alignment:
Q  151 ttcggcttatttccataagttcttcaggatagcttgtgaaaacagtttata 201  Q
    ||||| ||||||||||||| |||||| |||||||| |||||||||||||||    
T  19275656 ttcggtttatttccataagctcttcatgatagcttatgaaaacagtttata 19275706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 8365000 - 8365064
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatt 219  Q
    |||||||| ||| |||||  || |||||||| |||||||||||||||| |||||||| |||||||    
T  8365000 gcttattttcatcagttcaccatgatagcttatgaaaacagtttataacttatataaaaacaatt 8365064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 33498665 - 33498625
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacag 195  Q
    ||||||||||||||||| ||||||||| |||||||||||||    
T  33498665 gcttatttccataagtttttcaggataacttgtgaaaacag 33498625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 2735119 - 2735041
Alignment:
Q  151 ttcggcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    |||||||||||| |||||||| |||| ||| |||| ||||||||| |||||  ||||| || || ||||| ||||||||    
T  2735119 ttcggcttattttcataagttgttcaagattgcttatgaaaacagcttatagattatacaaaaataatttaactttatt 2735041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 33500501 - 33500559
Alignment:
Q  151 ttcggcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatat 209  Q
    |||| |||||||||||||||||| || ||||||||| | |||||| |||||| ||||||    
T  33500501 ttcgacttatttccataagttctacatgatagcttgcggaaacagcttataacttatat 33500559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 4006738 - 4006686
Alignment:
Q  177 ggatagcttgtgaaaacagtttataagttatataataacaatttgactttatt 229  Q
    ||||||||| ||||||||  |||||  |||||||| |||||||||||||||||    
T  4006738 ggatagcttatgaaaacaacttatagcttatataaaaacaatttgactttatt 4006686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 18264375 - 18264303
Alignment:
Q  155 gcttatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgacttta 227  Q
    ||||||||||||||  |||||||||||| ||  ||||| || |||||| || ||| | |||||||||||||||    
T  18264375 gcttatttccataacctcttcaggatagtttaagaaaatagcttataacttgtatgaaaacaatttgacttta 18264303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 20861617 - 20861649
Alignment:
Q  108 tgtttggtttgtcttatttgagcttacctactg 140  Q
    ||||||| |||||||||||||||||||||||||    
T  20861617 tgtttggattgtcttatttgagcttacctactg 20861649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 33787772 - 33787840
Alignment:
Q  158 tatttccataagttcttcaggatagcttgtgaaaacagtttataagttatataataacaatttgacttt 226  Q
    |||||||||||| ||| || |||| ||| ||||||||| |||||| |||||| | | ||||||||||||    
T  33787772 tatttccataagctctccaagataacttatgaaaacagcttataacttatatgaaatcaatttgacttt 33787840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 33887875 - 33887831
Alignment:
Q  156 cttatttccataagttcttcaggatagcttgtgaaaacagtttat 200  Q
    ||||||||||||||   ||||||||||||| ||||||||||||||    
T  33887875 cttatttccataagcatttcaggatagcttatgaaaacagtttat 33887831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University