View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17945_high_2 (Length: 627)
Name: NF17945_high_2
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 18 - 614
Target Start/End: Original strand, 3567996 - 3568592
Alignment:
| Q |
18 |
gatattgacctatctaagcgtgtgtatgatgaaatccttgtggggcggcagggtttttctttcaaagtagatatgcagtatgagcgcatgcctctttttt |
117 |
Q |
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| T |
3567996 |
gatattgacctatctaagcgtgtgtatgatgaaatccttgtggagcggcagggtttttctttcaaagtagatatgcagtatgagcgcatgcctctttttt |
3568095 |
T |
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| Q |
118 |
gtcatcattgttatgttattggtcataacatttcaaattgtaagtggttgcatcccagagccttctcgcgacaaagacaaaggaaagaagaaggtggagg |
217 |
Q |
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| T |
3568096 |
gtcatcattgttatgtcattggtcataacatttcaaattgtaagtggttgtatcccagagccttctcgcgacaaagacaaaggaaagaagaaggtggagg |
3568195 |
T |
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| Q |
218 |
atgaataaatttttgttcccattaagcatgtggaagtgacaacacctttgtccactgcgactgttgatgttaatcaagaaaaatgttcttcgtctgatgt |
317 |
Q |
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| T |
3568196 |
atgaataaatttttgttcccattaagcatgtggaagtgacaacacctttgtccactgcgactgttgatgttaatcaagaaaaatcttcttcgtctgatgt |
3568295 |
T |
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| Q |
318 |
tccttccaaggatatttccgccaactcctttagcttcaccttgaagaatgtgtcggatcatattcctcaaggtagacttcctcgtcctgatatccatgtt |
417 |
Q |
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| T |
3568296 |
tccttccaaggatatttccgccaactcctttagcttcaccttgaagaatgtgtcggatcatattcctcaaggtagacttcctcgtcctgatatccatgtt |
3568395 |
T |
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| Q |
418 |
ttggagttggccactgatgttgagcaagatgacatgcaagttcttcaaatggagcaaacgcagccagaaaacacgaacttgcatgttcctttttcggttg |
517 |
Q |
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| T |
3568396 |
ttggagttggccactgatgttgagcaagatgacatgcaagttcttcaaatggagcaaacgcagccagaaaacacgaactcgcatgttcctttttcggttg |
3568495 |
T |
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| Q |
518 |
cagctgcgtcggtttcaagttttgtagagcacgttgaagtgcatgatgatttggcttctactgatttggtttctgctagagagcaatctcctttgct |
614 |
Q |
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| T |
3568496 |
cagctgcgtccgtttcaagttttgtagagcacgttgaagtgcatgatgatttggcttctactgatttggtttctgctagagaggaatctcctttgct |
3568592 |
T |
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