View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17945_high_25 (Length: 296)
Name: NF17945_high_25
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 52759967 - 52760236
Alignment:
| Q |
19 |
attgcctctacttgagagttacagtccatagttgctcgcatcaatgttttttgaatctgcatttgaatttaaattatttagatagggagagatgttaaaa |
118 |
Q |
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| T |
52759967 |
attgcctctacttgagagttacagtccatagttgctcgcatcaatgttttttgaatctgcatttgaatttaaattatttagatagggagagatgttaaaa |
52760066 |
T |
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| Q |
119 |
attaaaatctatatagatttaaacacatcttataaaaaatttaattcacatttcaagnnnnnnncctggcttgttgcaaaaacagggcaccagccttctg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52760067 |
attaaaatctatatagatttaaacacatcttataaaaaatttaattcacatttcaag-aaaaaacctggcttgttgcaaaaacagggcaccagccttctg |
52760165 |
T |
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| Q |
219 |
caaggagacatttctttgtcacattaatgtttagcatatttagaatgtgataaatggacttttccctttgc |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52760166 |
caaggagacatttctttgtcacattaatgtttagcatatttagaatgtgataaatggacttttccttttgc |
52760236 |
T |
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