View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17945_high_29 (Length: 276)
Name: NF17945_high_29
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 21624505 - 21624624
Alignment:
| Q |
1 |
tagccatatattgctccctttgcacgtaacaaatagaaaaggatttgatcactttataatatatataaagcttgagttttctttacacaaattaaatatt |
100 |
Q |
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| T |
21624505 |
tagccatatattgctccctttgcacgtaacaaatagaaaaggatttgatcactttata--atatataaagcttgagttttctttacacaaattaaatatt |
21624602 |
T |
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| Q |
101 |
tttagcacacttattaaaatgt |
122 |
Q |
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| T |
21624603 |
tttagcacacttattaatatgt |
21624624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 22181017 - 22180956
Alignment:
| Q |
79 |
ttctttacacaaattaaatat-ttttagcacacttattaaaatgtctcttaactagattgaa |
139 |
Q |
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| T |
22181017 |
ttctttacatagattaaatagattttagcacacttattaaaatgtctcttaactaaattgaa |
22180956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 22180512 - 22180460
Alignment:
| Q |
79 |
ttctttacacaaattaaata-tttttagcacacttattaaaatgtctcttaacta |
132 |
Q |
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| T |
22180512 |
ttctttacacatattaaatagtttttagcac--ttattaaaatgtctcttaacta |
22180460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 19281300 - 19281342
Alignment:
| Q |
99 |
tttttagcacacttattaaaatgtctcttaactagattgaagt |
141 |
Q |
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| T |
19281300 |
tttttagcataattattaaaatgtctcttaactacattgaagt |
19281342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 25597694 - 25597656
Alignment:
| Q |
27 |
taacaaatagaaaaggatttgatcactttataatatata |
65 |
Q |
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| T |
25597694 |
taacaaatagaaaatgatttgatcactttataatatata |
25597656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 34392678 - 34392751
Alignment:
| Q |
87 |
acaaattaaatatttttagcacacttattaaaatgtctcttaactagattgaagtcttatgttttccccttttt |
160 |
Q |
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| T |
34392678 |
acaaattaaatagttgttacaaacttagtaaaatgtctcttaactatattgaagtttcatgtttgacccttttt |
34392751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 34484964 - 34484924
Alignment:
| Q |
110 |
cttattaaaatgtctcttaactagattgaagtcttatgttt |
150 |
Q |
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|||| |||||||||||||||||| |||||||| |||||||| |
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| T |
34484964 |
cttagtaaaatgtctcttaactacattgaagtgttatgttt |
34484924 |
T |
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