View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17945_high_30 (Length: 275)
Name: NF17945_high_30
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_high_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 40220428 - 40220177
Alignment:
| Q |
10 |
acatcatcatgacacttttagtttaaacatacatacatatagtaattgtaaataagaagagaaaagagtatataccttgctgctgcagattgtgatgata |
109 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40220428 |
acatcatcatgacacttttagtttacacatacatacatatagtaagtgtaaataagaagagaaaagagtatataccttgctgccgcagattgtgatgata |
40220329 |
T |
|
| Q |
110 |
ttgtgaaaataaatcattgccaccatgaatgcggtttaaggaaggagttatagttgaagtgttgttaggagaagtagtagggactgggactggtcttgga |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40220328 |
ttgtgaaaataaatcattgccaccatgaatgcggtttaaggaaggagttatagttgaagtgttgttaggagaagtagtagggactaggactggtcttggc |
40220229 |
T |
|
| Q |
210 |
atgagaggccttagtttccttccactgaatggataatcagccatgttgaact |
261 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40220228 |
atgagaggccttagtttccttccacagaatggataatcagccatgttgaact |
40220177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 261
Target Start/End: Original strand, 45305089 - 45305331
Alignment:
| Q |
15 |
atcatgacacttttagtttaaacatacatacatatagtaattgtaaataagaagagaaaagagtatataccttgctgctgcagattgtgatgatattgtg |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
45305089 |
atcatgacacttttagtttaaacat----acatatagtaagtgtaaataagaagagaaaagagtatataccttgctgctgcagattatgatgatactgtg |
45305184 |
T |
|
| Q |
115 |
aaaataaatcattgccaccatgaatgcggtttaaggaaggagttatagttgaagtgttgttaggagaagtagtagggactgggactggtcttggaatgag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45305185 |
aaaataaatcattgccaccatgaatgcggtttaaggaaggagttatagttgaagtgttgttaggagaagtagtagggactgggactggtcttggaatgag |
45305284 |
T |
|
| Q |
215 |
aggccttagtttccttccactgaatggataatcagccatgttgaact |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45305285 |
aggccttagtttccttccactgaatggataatcagccatgttgaact |
45305331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 40005118 - 40005375
Alignment:
| Q |
10 |
acatcatcatgacacttttagtttaaacatacatacatatagtaattgtaaataagaagagaaaagagtatataccttgctgctgcagattgtgatgata |
109 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40005118 |
acatcatcatgacacttttagtttacacatacatacatatggtaagtgtaaataagaagagaaaagagtatataccttgctgctgcagattgtgatgata |
40005217 |
T |
|
| Q |
110 |
ttgtgaaaataaatcattgccaccatgaatgcggtttaaggaaggagttatagttgaagtgttgttaggagaagtagtagggac------tgggactggt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40005218 |
ttgtgaaaataaatcattgccaccatgaatgcggtttaaggaaggagttatagttgaagtgttgttaggagaagtagtagggactgggattgggactggt |
40005317 |
T |
|
| Q |
204 |
cttggaatgagaggccttagtttccttccactgaatggataatcagccatgttgaact |
261 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40005318 |
cttgacatgagaggccttagtttccttccacataatggataatcagccatgttgaact |
40005375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University