View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17945_high_39 (Length: 244)
Name: NF17945_high_39
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 15634697 - 15634917
Alignment:
| Q |
17 |
acaaatttggtgtaaaccgcagagggctacacattgatatgagcactacacccaggtacatcaaaagtcataaaatagaagatctcacgtctttcaaata |
116 |
Q |
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| T |
15634697 |
acaaatttggtgtaaaccgcagagggctacacattgatatgagcactacgcctaggtacatcaaaagtcataaaatagaatatctcacgtctttcaaata |
15634796 |
T |
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| Q |
117 |
gtgaattctagtggtcacgagttttattccaaggttgatagccttcatgtgggccacgaaatattgaatccatggcgagtgccctccaccnnnnnnnntt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
15634797 |
gtgaattctagtggtcacgagttttattccaaggttgatagccttcatgtgggccacaaaatattgaatccatggcgagtgccctccaccaaaaactttt |
15634896 |
T |
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| Q |
217 |
caaattgctcgccctttgcta |
237 |
Q |
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|||||||||||||||| |||| |
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| T |
15634897 |
caaattgctcgcccttggcta |
15634917 |
T |
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