View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17945_high_45 (Length: 221)
Name: NF17945_high_45
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_high_45 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 4046974 - 4046798
Alignment:
| Q |
26 |
ccaaatatacccttcaactcaataacaatcagacatggatcatatacacttcttcaccgatcaacttcaaccatgatggttcagaggttaaatccggtcc |
125 |
Q |
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| T |
4046974 |
ccaaatatacccttcaactcaataacaatcagacatggatcatatacacttcttcaccaatcaacttcaaccatgatggttccgaggttaaatccggtcc |
4046875 |
T |
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| Q |
126 |
attttccggtattattcgtatcgcggttgttcctgattccaatggtgagaaaattcttgataaattcagctcttgtt |
202 |
Q |
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| T |
4046874 |
attttccggtattattcgtatcgcggttgttcctgattccaatggtgagaaaattcttgataaatttagctcttgtt |
4046798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 3753264 - 3753440
Alignment:
| Q |
26 |
ccaaatatacccttcaactcaataacaatcagacatggatcatatacacttcttcaccgatcaacttcaaccatgatggttcagaggttaaatccggtcc |
125 |
Q |
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||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||||| || || ||||||||||||||||| ||| || |||| ||| |
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| T |
3753264 |
ccaaacatacccttcaacttaataacactcagaaatggatcatatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaatcc |
3753363 |
T |
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| Q |
126 |
attttccggtattattcgtatcgcggttgttcctgattccaatggtgagaaaattcttgataaattcagctcttgtt |
202 |
Q |
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| T |
3753364 |
attttccggtataatccgtatcatagtcattcctaataccaaatttgagaaaattcttgataaattcagctcttgtt |
3753440 |
T |
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