View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17945_high_5 (Length: 543)
Name: NF17945_high_5
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 63 - 329
Target Start/End: Complemental strand, 11908454 - 11908190
Alignment:
| Q |
63 |
tatcaacgttagtacgatttttatttcttcaaattttgtagtgcctgggatgcttagagtttctgggtccatctcgtgttttgatcgattattatgtgct |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11908454 |
tatcaacgttagtacgatttttatttcttcaaattttgtagtg--ttggatgcttagagtttctgggtccatctcgtgttttgatcgattattatgtgct |
11908357 |
T |
|
| Q |
163 |
atatattttaacaggatgttgttctaggtgattcttttaactggatttgttcaaaagatgaggtgaatttgatttttcgaatactcgatatatctctcta |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
11908356 |
atatattttaacaggatgttgttctaggtgattcttttaactggatttgttcaaaagatgatgtgaaattaatttttcgaatactcgatatatctctcta |
11908257 |
T |
|
| Q |
263 |
agcatccaatcaaacaaaatttgaagtcacnnnnnnnntattacgatcaatgttaatgagatcttta |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11908256 |
agcatccaatcaaacaaaatttgaagtcacaaaaaaaatattacgatcaatgttaatgagatcttta |
11908190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 423 - 527
Target Start/End: Complemental strand, 11908100 - 11907996
Alignment:
| Q |
423 |
ctgggtttgctagtttacactttcttatattttggtgggtactataaactactagcaagctataactataactacaaatttatagaggttagttcatgtt |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11908100 |
ctgggtttgctagtttacactttcttatattttggtgggtactgtaaaccactagcaagctataactataactacaaatttatagaggttagttcatgtt |
11908001 |
T |
|
| Q |
523 |
gacat |
527 |
Q |
| |
|
||||| |
|
|
| T |
11908000 |
gacat |
11907996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 521
Target Start/End: Complemental strand, 11891690 - 11891651
Alignment:
| Q |
482 |
ctataactataactacaaatttatagaggttagttcatgt |
521 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11891690 |
ctatgactataactacaaatttatagaggttagttcatgt |
11891651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 521
Target Start/End: Complemental strand, 11897356 - 11897317
Alignment:
| Q |
482 |
ctataactataactacaaatttatagaggttagttcatgt |
521 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11897356 |
ctatgactataactacaaatttatagaggttagttcatgt |
11897317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University