View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17945_high_9 (Length: 493)
Name: NF17945_high_9
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Complemental strand, 7099776 - 7099306
Alignment:
| Q |
18 |
agagagtaactccacaatcttctataaaatgagtgatacatgaggttacaagaaattagatccaaaaggtcacaaacaacaatcaataattttacccatt |
117 |
Q |
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||||||||||||| || || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7099776 |
agagagtaactccgcagtcctctataaaatgagtgatacatgaggttacacgaaattagatccaaaaggtcacaaacaacaatcaataattttacccatt |
7099677 |
T |
|
| Q |
118 |
catcaagccattgaaccgtcctagagatcccaagagaaaacaagagagaaatctttgatcctaccactaataagatctcactaaccaaggtatttcaaat |
217 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
7099676 |
catcaagccattgaaccgtcgtagagatcctaagagaaaacaagagagaaatctttgatcccgccactaataagatctcactaaccaaggtatttgaaat |
7099577 |
T |
|
| Q |
218 |
gtgtttcataatccaaaaatcttatctaaagatacttaactcttagcctcgaagttttataagagttccttcctttg-----gtgtcatgagattagcca |
312 |
Q |
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| T |
7099576 |
gtgtttcataatccaaaaatattatctaaagatactcaactcttagcctcgaagttttataagagttccttcctttcctttagtgtcatgagattagcca |
7099477 |
T |
|
| Q |
313 |
caaaagaatgagaaaaagttgattttataggtacatatcccgagacatgcgtccaacaaccaaccaacatgaacaatgactcatcatattagatctattt |
412 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7099476 |
caaaagaatgagaaaaggctgattttataggtacatatcccgagacatgcgcccaacaaccaaccaacataaacaatgactcatcatattagatctattt |
7099377 |
T |
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| Q |
413 |
agatcaacgagtgccctacaatgggcttgaacctaataattatactattatacccatcttaatcattcatt |
483 |
Q |
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| T |
7099376 |
agatcaacgagtgccctacaatgggcttgaacctaataattatactattatacccatcttaatcattcatt |
7099306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 197
Target Start/End: Complemental strand, 41163263 - 41163107
Alignment:
| Q |
44 |
aaatgagtgatacat-gaggttacaagaaattagatccaaaaggtcacaaacaacaatcaataatttt-acccattcatcaagccattgaa-ccgtccta |
140 |
Q |
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|||||||||||||| |||||| ||| |||||||||||||||| ||| ||| ||||| | |||||| ||||| | |||||| || | || || | || |
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| T |
41163263 |
aaatgagtgatacaaagaggttccaaaaaattagatccaaaagctcataaagaacaaaccctaatttcgacccagttatcaagtcactcaaacccacata |
41163164 |
T |
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| Q |
141 |
gagatcccaagagaaaacaagagagaaatctttgatcctaccactaataagatctca |
197 |
Q |
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| T |
41163163 |
gagatcctgagagaaaacaagagagaaagctttggtccttcctctaatgagatctca |
41163107 |
T |
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