View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17945_low_10 (Length: 488)
Name: NF17945_low_10
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 16031749 - 16031291
Alignment:
| Q |
1 |
caacaatgtttcttcaacattacaatttatctatattttaaaatgttatcctttctcccacaaataggtttcgttccacaaattcacaattgcctcccct |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
16031749 |
caacaaagtttcttcaacattacaatttatctatattttaaaatgttatcctttctcccacaaataggtgtcgttccacaaattcacaattgcgtcccct |
16031650 |
T |
|
| Q |
101 |
attgcacccatattactatgttcaaagtgcagagggtcggtccgtccccatggcttggttctccttccattattattttgttcatacattgtttagtagt |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16031649 |
attgcatccatattactatgttcaaagtgcagagggtcggtccgtccccatggcttggttctccttccattattatttttttcatacattgtttagtagt |
16031550 |
T |
|
| Q |
201 |
tttaagatctcaattgggtatgtaacatttactggtttcataatttctgtaattaattaaagctagaaatctattggtattgtatttgagttcaaatgaa |
300 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16031549 |
tttaagatctcaattgggtatgtaacatttagtggtttcataatttctgtaattaattaaagctagaaatctattggtattgtatttgagttcaaatga- |
16031451 |
T |
|
| Q |
301 |
acaacattgtttagtaattaaaattcatggtggtgatatttataaggaagactacttacaagttcacagtttcccggcgctcttccccgaagtaaattaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16031450 |
---------------aattaaaattcatggtggtgatatttataaggaagactacttacaagttcacagtttcccggcgctcttcaccgaagtaaattaa |
16031366 |
T |
|
| Q |
401 |
ggaaggcggcgaaaagttgtttgcatag--nnnnnnnncttcataattttgtagagttttaatatgcaaaaaatg |
473 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16031365 |
ggaaggcggcgaaaagttgtttgcatagttttttttttgttcataattttgtagagttttaatatgcaaaaaatg |
16031291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 330 - 473
Target Start/End: Complemental strand, 18623640 - 18623495
Alignment:
| Q |
330 |
gtggtgatatttataaggaagactacttacaagttcacagtttcccggcgctcttccccgaagtaaattaaggaaggcggcgaaaagttgtttgcatag- |
428 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18623640 |
gtggtgatatttataaggaagactacttacaagttcacagttttccggcgctcttcatcgaagtaaattaaggaaggcggcgaaaagttgtttgcatagt |
18623541 |
T |
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| Q |
429 |
-nnnnnnnncttcataattttgtagagttttaatatgcaaaaaatg |
473 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
18623540 |
tttttttttgttcataattttgcagagttttaatatgcaaaaaatg |
18623495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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