View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17945_low_14 (Length: 444)
Name: NF17945_low_14
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_low_14 |
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| [»] scaffold0312 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 10 - 429
Target Start/End: Original strand, 42038394 - 42038813
Alignment:
| Q |
10 |
catcatcattgaatattaattctttttcctatttctcttaaacnnnnnnncaatcacagtggtggaatctgtgaatccaatggatactagaagcaatgaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42038394 |
catcatcattgaatattaattctttttcctatttctcttaaactttttttcaatcacagtggtggaatctgtgaatccaatggatactagaagcaatgaa |
42038493 |
T |
|
| Q |
110 |
gaagaaagagagattgagaatcatcacattgaagagggtcaagtggctatggatgaagagttgaatagaatagcaccatggaggaaacagataacagtta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42038494 |
gaagaaagagagattgagaatcatcacattgaagagggtcaagtggctatggatgaagagttgaatagaatagcaccatggaggaaacagataacagtta |
42038593 |
T |
|
| Q |
210 |
gaggactaatagctagtcttataattggaataatttatagtgtgattgtgatgaaactcaatctcactactggattagtccctaatctcaatgtttctgc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42038594 |
gaggactaatagctagtcttataattggaataatttatagtgtgattgtgatgaaactcaatctcactactggattagtccctaatctcaatgtttctgc |
42038693 |
T |
|
| Q |
310 |
tgctctacttggttttgtgtttattcgaagttggactaagattctttcaaaagctaatattgtatcagctccattcacaagacaagagaatactatcatt |
409 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42038694 |
tgctctacttggtttcgtgtttattcgaagttggactaagattctttcaaaagctaatattgtatcagctccattcacaagacaagagaatactatcatt |
42038793 |
T |
|
| Q |
410 |
caaacttgtgcagttgcttg |
429 |
Q |
| |
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|||||||||||||||||||| |
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| T |
42038794 |
caaacttgtgcagttgcttg |
42038813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 180 - 426
Target Start/End: Complemental strand, 441393 - 441147
Alignment:
| Q |
180 |
tagcaccatggaggaaacagataacagttagaggactaatagctagtcttataattggaataatttatagtgtgattgtgatgaaactcaatctcactac |
279 |
Q |
| |
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|||||||||||| ||||||||| ||| |||||||||||||||| || || | ||||| |||||||||||||||||||||||||| || || ||||| || |
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| T |
441393 |
tagcaccatggatgaaacagatcacaattagaggactaatagcaagcattcttattggcataatttatagtgtgattgtgatgaagctgaacctcacaac |
441294 |
T |
|
| Q |
280 |
tggattagtccctaatctcaatgtttctgctgctctacttggttttgtgtttattcgaagttggactaagattctttcaaaagctaatattgtatcagct |
379 |
Q |
| |
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||| ||||||||||||||||||||||| | ||| || ||||| |||||||| || | |||||||||||||||| ||||| |||||||| ||| | |
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| T |
441293 |
tggtttagtccctaatctcaatgtttcagttgcacttcttggctttgtgttcatcaaactttggactaagattcttgagaaagcaaatattgtttcaaca |
441194 |
T |
|
| Q |
380 |
ccattcacaagacaagagaatactatcattcaaacttgtgcagttgc |
426 |
Q |
| |
|
|| ||||| ||||| || ||||| || ||||| |||||||| ||||| |
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|
| T |
441193 |
cctttcactagacaggaaaataccataattcagacttgtgctgttgc |
441147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 175 - 426
Target Start/End: Complemental strand, 410846 - 410595
Alignment:
| Q |
175 |
tagaatagcaccatggaggaaacagataacagttagaggactaatagctagtcttataattggaataatttatagtgtgattgtgatgaaactcaatctc |
274 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||| |||||||||||||||| || | | ||||| ||| |||||||||||||||||||||| || || ||| |
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|
| T |
410846 |
tagagtagcaccatggatgaaacagatcacaattagaggactaatagcaagcatccttattggcatagtttatagtgtgattgtgatgaagctgaacctc |
410747 |
T |
|
| Q |
275 |
actactggattagtccctaatctcaatgtttctgctgctctacttggttttgtgtttattcgaagttggactaagattctttcaaaagctaatattgtat |
374 |
Q |
| |
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|| ||||| |||||||||||||||||||||| | || || ||||| |||||||| || | |||||||||||||||| ||||| ||||||| | |
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| T |
410746 |
acaactggtctagtccctaatctcaatgtttcagtagcacttcttggctttgtgttcatcaaactttggactaagattcttgagaaagcaaatattgctt |
410647 |
T |
|
| Q |
375 |
cagctccattcacaagacaagagaatactatcattcaaacttgtgcagttgc |
426 |
Q |
| |
|
|| | || ||||| ||||| || ||||| || ||||| |||||||| ||||| |
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|
| T |
410646 |
caacacctttcactagacaggaaaataccataattcagacttgtgctgttgc |
410595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 177 - 426
Target Start/End: Complemental strand, 428759 - 428510
Alignment:
| Q |
177 |
gaatagcaccatggaggaaacagataacagttagaggactaatagctagtcttataattggaataatttatagtgtgattgtgatgaaactcaatctcac |
276 |
Q |
| |
|
||||||||||||||| |||||| | ||| |||||||||||||| ||||| | | ||||| ||| | ||||||||||||||| |||| || || ||||| |
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|
| T |
428759 |
gaatagcaccatggacaaaacagttcacaattagaggactaataactagtatccttattggtatagtgtatagtgtgattgtgctgaagctgaacctcac |
428660 |
T |
|
| Q |
277 |
tactggattagtccctaatctcaatgtttctgctgctctacttggttttgtgtttattcgaagttggactaagattctttcaaaagctaatattgtatca |
376 |
Q |
| |
|
||||| |||| ||||||||||||||||| | || || ||||| |||||||| ||| | |||||||||||||||| ||||| |||||||| ||| |
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|
| T |
428659 |
aactggtctagttcctaatctcaatgtttcagtggcacttcttggctttgtgttcattaaactttggactaagattcttgagaaagcaaatattgtttca |
428560 |
T |
|
| Q |
377 |
gctccattcacaagacaagagaatactatcattcaaacttgtgcagttgc |
426 |
Q |
| |
|
| || ||||| ||||| |||||||| || ||||| |||||||| ||||| |
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|
| T |
428559 |
acacctttcactagacaggagaataccataattcagacttgtgctgttgc |
428510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 426
Target Start/End: Complemental strand, 403756 - 403507
Alignment:
| Q |
177 |
gaatagcaccatggaggaaacagataacagttagaggactaatagctagtcttataattggaataatttatagtgtgattgtgatgaaactcaatctcac |
276 |
Q |
| |
|
||||||||||||||| |||||| | ||| |||||||||||||| |||| | | ||||| ||| | ||||||||||||||| |||| || || ||||| |
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|
| T |
403756 |
gaatagcaccatggacaaaacagttcacaattagaggactaataactagcatccttattggtatagtgtatagtgtgattgtgctgaagctgaacctcac |
403657 |
T |
|
| Q |
277 |
tactggattagtccctaatctcaatgtttctgctgctctacttggttttgtgtttattcgaagttggactaagattctttcaaaagctaatattgtatca |
376 |
Q |
| |
|
||||| |||| ||||||||||||||||| | || || ||||| |||||||| ||| | |||||||||||||||| ||||| |||||||| ||| |
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|
| T |
403656 |
aactggtctagttcctaatctcaatgtttcagtggcacttcttggctttgtgttcattaaactttggactaagattcttgagaaagcaaatattgtttca |
403557 |
T |
|
| Q |
377 |
gctccattcacaagacaagagaatactatcattcaaacttgtgcagttgc |
426 |
Q |
| |
|
| || ||||| ||||| |||||||| || ||||| |||||||| ||||| |
|
|
| T |
403556 |
acacctttcactagacaggagaataccataattcagacttgtgctgttgc |
403507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 175 - 426
Target Start/End: Original strand, 19724 - 19975
Alignment:
| Q |
175 |
tagaatagcaccatggaggaaacagataacagttagaggactaatagctagtcttataattggaataatttatagtgtgattgtgatgaaactcaatctc |
274 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||| |||||||||||||||| || | | ||||| ||| |||||||||||||||||||||| || || ||| |
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|
| T |
19724 |
tagagtagcaccatggatgaaacagatcacaattagaggactaatagcaagcatccttattggcatagtttatagtgtgattgtgatgaagctgaacctc |
19823 |
T |
|
| Q |
275 |
actactggattagtccctaatctcaatgtttctgctgctctacttggttttgtgtttattcgaagttggactaagattctttcaaaagctaatattgtat |
374 |
Q |
| |
|
|| ||||| |||||||||||||||||||||| | || || ||||| |||||||| || | |||||||||||||||| ||||| ||||||| | |
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|
| T |
19824 |
acaactggtctagtccctaatctcaatgtttcagtagcacttcttggctttgtgttcatcaaactttggactaagattcttgagaaagcaaatattgatt |
19923 |
T |
|
| Q |
375 |
cagctccattcacaagacaagagaatactatcattcaaacttgtgcagttgc |
426 |
Q |
| |
|
|| | || ||||| ||||| || ||||| || ||||| |||||||| ||||| |
|
|
| T |
19924 |
caacacctttcactagacaggaaaataccataattcagacttgtgctgttgc |
19975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 177 - 426
Target Start/End: Original strand, 1791 - 2040
Alignment:
| Q |
177 |
gaatagcaccatggaggaaacagataacagttagaggactaatagctagtcttataattggaataatttatagtgtgattgtgatgaaactcaatctcac |
276 |
Q |
| |
|
||||||||||||||| |||||| | ||| |||||||||||||| ||||| | | ||||| ||| | ||||||||||||||| |||| || || ||||| |
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|
| T |
1791 |
gaatagcaccatggacaaaacagttcacaattagaggactaataactagtatccttattggtatagtgtatagtgtgattgtgctgaagctgaacctcac |
1890 |
T |
|
| Q |
277 |
tactggattagtccctaatctcaatgtttctgctgctctacttggttttgtgtttattcgaagttggactaagattctttcaaaagctaatattgtatca |
376 |
Q |
| |
|
||||| |||| ||||||||||||||||| | || || ||||| |||||||| ||| | |||||||||||||||| ||||| |||||||| ||| |
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|
| T |
1891 |
aactggtctagttcctaatctcaatgtttcagtggcacttcttggctttgtgttcattaaactttggactaagattcttgagaaagcaaatattgtttca |
1990 |
T |
|
| Q |
377 |
gctccattcacaagacaagagaatactatcattcaaacttgtgcagttgc |
426 |
Q |
| |
|
| || ||||| ||||| |||||||| || ||||| |||||||| ||||| |
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|
| T |
1991 |
acacctttcactagacaggagaataccataattcagacttgtgctgttgc |
2040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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