View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17945_low_16 (Length: 422)

Name: NF17945_low_16
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17945_low_16
NF17945_low_16
[»] chr3 (8 HSPs)
chr3 (1-226)||(48515147-48515375)
chr3 (213-411)||(48514929-48515127)
chr3 (1-43)||(5173958-5174000)
chr3 (1-43)||(37740846-37740888)
chr3 (1-43)||(44764800-44764842)
chr3 (1-43)||(49443371-49443413)
chr3 (6-39)||(4541983-4542016)
chr3 (1-42)||(24303470-24303511)
[»] chr8 (4 HSPs)
chr8 (1-43)||(38283204-38283246)
chr8 (1-43)||(43847015-43847057)
chr8 (1-43)||(15856454-15856496)
chr8 (1-41)||(31406837-31406877)
[»] chr7 (3 HSPs)
chr7 (1-43)||(12935820-12935862)
chr7 (1-39)||(27424919-27424957)
chr7 (1-37)||(7836890-7836926)
[»] chr4 (8 HSPs)
chr4 (1-43)||(12625909-12625951)
chr4 (1-43)||(31852429-31852471)
chr4 (1-43)||(49264606-49264648)
chr4 (1-43)||(51890877-51890919)
chr4 (2-43)||(16294278-16294319)
chr4 (1-42)||(42664061-42664102)
chr4 (1-41)||(2629659-2629699)
chr4 (3-43)||(40486523-40486563)
[»] chr1 (11 HSPs)
chr1 (1-43)||(19564101-19564143)
chr1 (1-43)||(29204725-29204767)
chr1 (1-42)||(7491841-7491882)
chr1 (1-43)||(23991212-23991254)
chr1 (1-43)||(26824271-26824313)
chr1 (1-43)||(29441453-29441495)
chr1 (1-43)||(31124586-31124628)
chr1 (1-43)||(41620459-41620501)
chr1 (6-39)||(2556642-2556675)
chr1 (1-42)||(41927056-41927097)
chr1 (1-42)||(45416127-45416168)
[»] chr5 (3 HSPs)
chr5 (1-40)||(14804933-14804972)
chr5 (1-43)||(5908266-5908308)
chr5 (2-43)||(15085508-15085549)
[»] chr6 (4 HSPs)
chr6 (1-43)||(17534927-17534969)
chr6 (1-43)||(29646496-29646538)
chr6 (6-39)||(30885521-30885554)
chr6 (3-43)||(32788802-32788842)
[»] chr2 (1 HSPs)
chr2 (1-39)||(23919429-23919467)
[»] scaffold0154 (1 HSPs)
scaffold0154 (6-43)||(1668-1705)
[»] scaffold0246 (1 HSPs)
scaffold0246 (3-43)||(24462-24502)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 5e-97; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 48515375 - 48515147
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagacnnnnnnnnn---ttaaagggagtatatccaaataagtgttattatatttatctatgc 97  Q
    ||||||||||| ||||| |||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  48515375 tccacatttaaatgtgtgaactctagccactaggctactagacaaaaaaaaaagtttaaagggagtatatccaaataagtgttattatatttatctatgc 48515276  T
Q  98 aaatttcataatttcaaaagaagtgatatataaaggagtattcgagaaagatagatagaaagagtgttgctagctcatcaaaattatatagttatattgt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48515275 aaatttcataatttcaaaagaagtgatatataaaggagtattcgagaaagatagatagaaagagtgttgctagctcatcaaaattatatagttatattgt 48515176  T
Q  198 ggtctatacaaggcatttaaattaagcct 226  Q
    |||||||||||||||||||||||||||||    
T  48515175 ggtctatacaaggcatttaaattaagcct 48515147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 213 - 411
Target Start/End: Complemental strand, 48515127 - 48514929
Alignment:
Q  213 tttaaattaagcctaacataaatatttttgttagaaaattaatatttggaattgtatatagggaaacaaataaagaaagtcctcaatgttgtgttgtctc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  48515127 tttaaattaagcctaacataaatatttttgttagaaaattaatatttggaattgtatatagggaaacatacaaagaaagtcctcaatgttgtgttgtctc 48515028  T
Q  313 tctatccgtttcttcatccatttctctattactctttctcatttataaaactagttcttggtgtgannnnnnnatgagttggtctaaatggttgttcat 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  48515027 tctatccgtttcttcatccatttctctattactctttctcatttataaaactagttcttggtgtgatttttttatgagttggtctaaatggttgttcat 48514929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5174000 - 5173958
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  5174000 tccacatttaattgtgtgagctctagccactaggctactagac 5173958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 37740846 - 37740888
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| ||||| ||||||||| |||||||||    
T  37740846 tccacatttaattgtgtgaactccagccactagactactagac 37740888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 44764800 - 44764842
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| | ||||||||||||||||| |||||    
T  44764800 tccacatttaattgtgtgagctctagccactaggctattagac 44764842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 49443413 - 49443371
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||| ||||| | |||||||||||||||||||||||    
T  49443413 tccacatttaaatgtgtgagctctagccactaggctactagac 49443371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 4541983 - 4542016
Alignment:
Q  6 atttaattgtgttaactctagccactaggctact 39  Q
    |||||||||||| |||||||||||||||||||||    
T  4541983 atttaattgtgtgaactctagccactaggctact 4542016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24303470 - 24303511
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactaga 42  Q
    ||||||||||||||||| | ||||||||||||||||| ||||    
T  24303470 tccacatttaattgtgtgagctctagccactaggctattaga 24303511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 38283204 - 38283246
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  38283204 tccacatttaattgtgtgaactctagccactaggctactagac 38283246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43847015 - 43847057
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  43847015 tccacatttaattgtgtgagctctagccactaggctactagac 43847057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15856496 - 15856454
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| | ||||| |||||||||||||||||    
T  15856496 tccacatttaattgtgtgagctctaaccactaggctactagac 15856454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31406837 - 31406877
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactag 41  Q
    ||||||||||||||||| | |||||| ||||||||||||||    
T  31406837 tccacatttaattgtgtgagctctagtcactaggctactag 31406877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12935820 - 12935862
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  12935820 tccacatttaattgtgtgagctctagccactaggctactagac 12935862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27424919 - 27424957
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctact 39  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  27424919 tccacatttaattgtgtgagctctagccactaggctact 27424957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7836926 - 7836890
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggcta 37  Q
    ||||||||||||||||| | |||||||||||||||||    
T  7836926 tccacatttaattgtgtgagctctagccactaggcta 7836890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12625909 - 12625951
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| ||||||||||||||||||| |||||    
T  12625909 tccacatttaattgtgtgaactctagccactaggctattagac 12625951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31852429 - 31852471
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    |||| |||||||||||| | |||||||||||||||||||||||    
T  31852429 tccatatttaattgtgtgagctctagccactaggctactagac 31852471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 49264606 - 49264648
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| | ||||||||||||||||| |||||    
T  49264606 tccacatttaattgtgtgagctctagccactaggctaatagac 49264648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 51890877 - 51890919
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| | ||||||||||||||||| |||||    
T  51890877 tccacatttaattgtgtgagctctagccactaggctattagac 51890919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 16294278 - 16294319
Alignment:
Q  2 ccacatttaattgtgttaactctagccactaggctactagac 43  Q
    |||||||||||| ||| | |||||||||||||||||||||||    
T  16294278 ccacatttaattatgtgagctctagccactaggctactagac 16294319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42664061 - 42664102
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactaga 42  Q
    ||||||||||||||||| | ||||||||||||| ||||||||    
T  42664061 tccacatttaattgtgtgagctctagccactagactactaga 42664102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2629659 - 2629699
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactag 41  Q
    ||||||||||||||||| | ||||||||| |||||||||||    
T  2629659 tccacatttaattgtgtgagctctagccattaggctactag 2629699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 40486523 - 40486563
Alignment:
Q  3 cacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||| ||||| | |||||||||||||||||||||||    
T  40486523 cacatttaaatgtgtgagctctagccactaggctactagac 40486563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19564143 - 19564101
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| ||||||||||| |||||||||||||    
T  19564143 tccacatttaattgtgtgaactctagccattaggctactagac 19564101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29204725 - 29204767
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    |||||||||| |||||| |||||||||||||||||||||||||    
T  29204725 tccacatttagttgtgtgaactctagccactaggctactagac 29204767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7491841 - 7491882
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactaga 42  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  7491841 tccacatttaattgtgtgagctctagccactaggctactaga 7491882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23991254 - 23991212
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| | |||||||||||||||| ||||||    
T  23991254 tccacatttaattgtgtgagctctagccactaggcttctagac 23991212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26824271 - 26824313
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| | ||||||||||||||||| |||||    
T  26824271 tccacatttaattgtgtgagctctagccactaggctattagac 26824313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29441453 - 29441495
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| | |||||||||| ||||||||||||    
T  29441453 tccacatttaattgtgtgagctctagccaccaggctactagac 29441495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31124628 - 31124586
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| | ||||||||||||||||| |||||    
T  31124628 tccacatttaattgtgtgagctctagccactaggctattagac 31124586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41620459 - 41620501
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| | |||||||||||||||||| ||||    
T  41620459 tccacatttaattgtgtgagctctagccactaggctacaagac 41620501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 2556642 - 2556675
Alignment:
Q  6 atttaattgtgttaactctagccactaggctact 39  Q
    |||||||||||| |||||||||||||||||||||    
T  2556642 atttaattgtgtgaactctagccactaggctact 2556675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41927056 - 41927097
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactaga 42  Q
    ||||||||||||||||| | ||||| ||||||||||||||||    
T  41927056 tccacatttaattgtgtgagctctaaccactaggctactaga 41927097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 45416168 - 45416127
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactaga 42  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||    
T  45416168 tccacatttaattgtgtgaactctaaccactaggcaactaga 45416127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 14804972 - 14804933
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctacta 40  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  14804972 tccacatttaattgtgtgaactctagccactaagctacta 14804933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5908308 - 5908266
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    |||| |||||||||||| | |||||||||||||||||||||||    
T  5908308 tccatatttaattgtgtgagctctagccactaggctactagac 5908266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 15085508 - 15085549
Alignment:
Q  2 ccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||| |||||||| | |||||||||||||||||||||||    
T  15085508 ccacattgaattgtgtaagctctagccactaggctactagac 15085549  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17534927 - 17534969
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| |  ||||||||||||||||||||||    
T  17534927 tccacatttaattgtgtgagttctagccactaggctactagac 17534969  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 29646538 - 29646496
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||||||| | ||| |||||||||||||||||||    
T  29646538 tccacatttaattgtgtgagctccagccactaggctactagac 29646496  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 30885554 - 30885521
Alignment:
Q  6 atttaattgtgttaactctagccactaggctact 39  Q
    |||||||||||| |||||||||||||||||||||    
T  30885554 atttaattgtgtgaactctagccactaggctact 30885521  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 32788842 - 32788802
Alignment:
Q  3 cacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||||||| | | |||||||||||||||||||||||    
T  32788842 cacatttaattgtatgagctctagccactaggctactagac 32788802  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23919467 - 23919429
Alignment:
Q  1 tccacatttaattgtgttaactctagccactaggctact 39  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  23919467 tccacatttaattgtgtgaactccagccactaggctact 23919429  T

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Target: scaffold0154 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 1705 - 1668
Alignment:
Q  6 atttaattgtgttaactctagccactaggctactagac 43  Q
    |||||||||||| | |||||||||||||||||||||||    
T  1705 atttaattgtgtgatctctagccactaggctactagac 1668  T

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Target: scaffold0246 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 24462 - 24502
Alignment:
Q  3 cacatttaattgtgttaactctagccactaggctactagac 43  Q
    ||||||||| ||||| | |||||||||||||||||||||||    
T  24462 cacatttaaatgtgtgagctctagccactaggctactagac 24502  T

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