View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17945_low_18 (Length: 398)
Name: NF17945_low_18
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 7131244 - 7131381
Alignment:
| Q |
14 |
cacagatgaatttatcctcggtgtacaagaacttattaaaatcaaaatgttaatctcagagttttacattggaaaagcaatacaacaaagataaatcatc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7131244 |
cacagatgaatttatcctcggtgtacaagaacttattaaaatcaaaatgttaatttcagagttttacattggaaaagcaatacaacaaagataaatcatc |
7131343 |
T |
|
| Q |
114 |
gatatagagaaaacacgactatatataaccattgagaa |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7131344 |
gatatagagaaaacacgactatatataaccattgagaa |
7131381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University