View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17945_low_21 (Length: 336)
Name: NF17945_low_21
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 31909338 - 31909666
Alignment:
| Q |
1 |
gggaacaatatttttcaactttctacaaatatttgctcataacaatttt-ttaagttgatcacttgattgatagatcatattagaccttcaaaaagttca |
99 |
Q |
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| T |
31909338 |
gggaacaatatttttcaactttctacaaatatttgctcataacaatttttttaagttgatcacttgattgatagatcatattagaccttcaaaaagttca |
31909437 |
T |
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| Q |
100 |
tatcatcctaaaatgacctataatatgcaacagtatgtcatactttgaacttcaacttttt--nnnnnnnttgatccaatttatttaataaaaagtttgt |
197 |
Q |
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| T |
31909438 |
tatcatcctaaaatgacctataatatgcaatagtatgtcatactttgaacttcaactttttaaaaaaaaattgacccaatttatttaataaaaagtttgt |
31909537 |
T |
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| Q |
198 |
ctcactcaagtctcatctaaactagggttatgccggacatcatatattttcacaattttaggtataaattgtgtgttgtagtttgggcattagttttgtt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
31909538 |
ctcactcaagtctcatctaaactagggttatgccggacatcatatattttcacaattttaggtataaatcgtgtgttgtagtttgggcattagttgtgtt |
31909637 |
T |
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| Q |
298 |
gtggtatctgtgtcgtgttcgatgatgtc |
326 |
Q |
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| T |
31909638 |
gtggtatctatgtcgtgttcgatgatgtc |
31909666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 31973943 - 31974064
Alignment:
| Q |
18 |
actttctacaaatatttgctcataacaattttttaagttgatcacttgattgatagatcatattagaccttcaaaaagttcatatcatcctaaaatgacc |
117 |
Q |
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| T |
31973943 |
actttctacaaatatttgctcataacaattttttaagttga--------ttgatagataatattagaccttcgaaaggttcatatcatcctaaaatgacc |
31974034 |
T |
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| Q |
118 |
tataatatgcaacagtatgtcatactttga |
147 |
Q |
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| T |
31974035 |
tataatatgcaatagtaggttatactttga |
31974064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 326
Target Start/End: Original strand, 31974177 - 31974305
Alignment:
| Q |
201 |
actcaagtctcatctaaactagggttatgccggacatc---atatattttcacaattttaggtataaattgtgtgttgtagtttgggcattagttttgtt |
297 |
Q |
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||||||||||| ||||| | ||| ||||| |||||||| ||| |||||||||| ||| |||||||||||||| || |||||| ||||||| | |
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| T |
31974177 |
actcaagtctcctctaatcaaggattatgtcggacatcttcataaattttcacaaacttacttataaattgtgtgtagtcatttggggattagttgcctc |
31974276 |
T |
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| Q |
298 |
gtggtatctgtgtcgtgttcgatgatgtc |
326 |
Q |
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| T |
31974277 |
gtggtatctgtgtcatgttctatgatgtc |
31974305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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