View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17945_low_23 (Length: 323)
Name: NF17945_low_23
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 9164293 - 9163999
Alignment:
| Q |
13 |
atacttagaacagatttgtattttgcgcattcctggcattcattcgggctcagtttcaaattgtcttctttacggtgctcatttttctgagttctttttt |
112 |
Q |
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| T |
9164293 |
atacttagaacagatttgtattttgcacattcctggcattcattcgggctcagtttcaaattgtcttcttaacggtgctcatttttctgagttctttttt |
9164194 |
T |
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| Q |
113 |
ctggaacaagctaaccaacttttgaatacttgtctatgaacttatactcccaatcctctaaaactgtgagctctgacttgtggaaaccttcgaggttccc |
212 |
Q |
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| T |
9164193 |
ctggaacaagctaaccaacttttgaatacttgtctatgaacttatactcccaatcctctaaaactgtgagctctgacttgtggaaaccttcgaggttccc |
9164094 |
T |
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| Q |
213 |
gttaatatcttgaggtttaaaagacaggagagcgaggggtaggttacattcttttccagcaaacattgcatacaatcctcctgaactgtaaaaat |
307 |
Q |
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| T |
9164093 |
gttaatatcttgaggtttaaaagacaggagagcgaggggtaggttacattcttttccagcaaacattgcatacaatcctcctgaaccgtaaaaat |
9163999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 9193531 - 9193806
Alignment:
| Q |
20 |
gaacagatttgtattttgcgcattcctggcattcattcgggct-cagtttcaaattgtcttctttacggtgctcatttttctgagttcttttttctggaa |
118 |
Q |
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| T |
9193531 |
gaacagatttgtattt-gcttactcctggcattcattcgggtttcatgttcgaattgtcttcttgactgtgctcgatttgctgagttcttggttctggaa |
9193629 |
T |
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| Q |
119 |
caagctaaccaacttttgaatacttgtctatgaacttatactcccaatcctctaaaactgtgagctctgacttgtggaaaccttcgaggttcccgttaat |
218 |
Q |
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| T |
9193630 |
caagctggccaacttttggatacttgtctatgaatttatactcccaatcctctaaaattgctagctctgactcgtccaaaccttcgaggttgccattaat |
9193729 |
T |
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| Q |
219 |
atcttgaggtttaaaagacaggagagcgaggggtaggttacattcttttccagcaaacattgcatacaatcctcctg |
295 |
Q |
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| T |
9193730 |
atcttgaggtttaaaagataggagagcaagggctcggctacattcctttccggcaaacattgcatacgatcctcctg |
9193806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 9128346 - 9128408
Alignment:
| Q |
114 |
tggaacaagctaaccaacttttgaatacttgtctatgaact--tatactcccaatcctctaaa |
174 |
Q |
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| T |
9128346 |
tggaacaagctaaccaacttttggatacttgtctatgaatttatatactcccaatcctctaaa |
9128408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 295
Target Start/End: Original strand, 9182234 - 9182333
Alignment:
| Q |
196 |
aaaccttcgaggttcccgttaatatcttgaggtttaaaagacaggagagcgaggggtaggttacattcttttccagcaaacattgcatacaatcctcctg |
295 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| | ||| | | | || ||||||| ||||| | ||||||||| ||| ||||||||| |
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| T |
9182234 |
aaaccttcgaggttcccattaatatcttgaggtttaaaagacaagtgagaaacagctcggctacattcctttccggaaaacattgcttacgatcctcctg |
9182333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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