View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17945_low_24 (Length: 310)
Name: NF17945_low_24
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 113 - 295
Target Start/End: Original strand, 2693805 - 2693988
Alignment:
| Q |
113 |
tatagtttac-attctcttcaagacaaaataggaagtttcatagcccaattacaaggtgggacatgtaagcatgctttattcccattattattaataagg |
211 |
Q |
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| T |
2693805 |
tatagtttactattctcttcaagacaaaataggaagtttcatagcccaattacaaggtgggacatgtaagcatgctttattcccattattattaataagg |
2693904 |
T |
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| Q |
212 |
tcaaaatgtatcatactatcatgtatgtaaagtgtactctcaaatttagatggaccaagtttttccaaacaatacatggtactt |
295 |
Q |
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| T |
2693905 |
tcaaaatgtattatactatcatgtatgtaaagtgtactctcaaatttagatggaccaagtttttccaaacaagacatggtactt |
2693988 |
T |
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Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 2693565 - 2693659
Alignment:
| Q |
20 |
aacataatttaaggtatgttactaaataaatataattaactaaattgaaaattcgaaaatagtcttaacagaagatacgatagccctaaggtata |
114 |
Q |
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| T |
2693565 |
aacataatttaaggtatgttactaaataaatataattaactaaattgaaaattcgaaaatagtcttaacagaagatacgatagccttaaggtata |
2693659 |
T |
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