View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17945_low_27 (Length: 292)
Name: NF17945_low_27
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 276
Target Start/End: Complemental strand, 6449745 - 6449485
Alignment:
| Q |
16 |
caaaggcatcaataacaataacacttagggggaagagatgttgagaaacaaaagttatagaaggcaagaatagaactcaataaaacacataggtagaaga |
115 |
Q |
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| T |
6449745 |
caaaggcaacaataacaataacacttagggggaagagatgttgagaaacaaaagttattgaaggcaagaatagaactcaataaaacacataggtagaaga |
6449646 |
T |
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| Q |
116 |
caggctgaaaaggagaaagaaagaggaaaatagaactcaatcaaatcaagaagtgattgaaattaggttcaccctctagcttcttgannnnnnncttcct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
6449645 |
caggctgaaaaggagaaagaaagaggaaaatagaactcaatcaaatcaagaagtgattgaaattaggttcactctctagcttcttgattttttttttcct |
6449546 |
T |
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| Q |
216 |
attaagctaaataggcacttaaattatggagtgaaaaattcaggtgtttgcggtgaatatg |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6449545 |
attaagctaaataggcacttaaattatggagtgaaaaaatcaggtgtttgcggtgaatatg |
6449485 |
T |
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