View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17945_low_3 (Length: 577)
Name: NF17945_low_3
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 219 - 568
Target Start/End: Original strand, 304993 - 305343
Alignment:
| Q |
219 |
cttgtgaaataagtaagaaagaatgagaatgaaaatgtaaaataccattagtacattttttggtcctcaaaatcttcctctcttcatcaggagaagcaat |
318 |
Q |
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| T |
304993 |
cttgtgaaataagtaagaaagaatgagaatgaaaatgtaaaataccattagtacattttttggtcctcaaaatcttcctctcttcatcaggagaagcaat |
305092 |
T |
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| Q |
319 |
aatgaatgaatttcttttggaaacccaagcatccctaagctctgaaggaatacccannnnnnnnnnnngttgttgttgttgatgaattctgaatcttatt |
418 |
Q |
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| T |
305093 |
aatgaaagaatttcttttggaaacccaagcatccctaagctctgaaggaatacccattttttctttttgttgttgttgttgatgaattttgaatcttatt |
305192 |
T |
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| Q |
419 |
tgtaggaactaaaaattgttactattagccgacaacgatggagaaa-caaaattgagtttggtgtgaaaatgaatgattgaaggaatcaatcggtgaagg |
517 |
Q |
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| T |
305193 |
tgtaggaactaaaaattgttactattagccgacaacgatggagaaaacaaaattgaatttggtgtgaaaatgaatgattgaaggaatcaatcgatgaagg |
305292 |
T |
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| Q |
518 |
gtgaagcttgtaatgttttattcttcttcgttcatgtttggcagcaatttt |
568 |
Q |
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| T |
305293 |
gtcaagcttgtaatgtattattcttcttcgttcatgtttggcagcaatttt |
305343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 304757 - 304967
Alignment:
| Q |
1 |
caacttatgtgggctagtccatatagagctttgctctgggtggggttgatcccctagattaatttattagtcggttcttggaccgaatatcgaacatgaa |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||| |
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| T |
304757 |
caacttatgtgggttagtccatatagagctttgctctgggtggggttgatcccctagattaattgattagtaggttcttggaccgggaaccgaacatgaa |
304856 |
T |
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| Q |
101 |
atatcatcaaccagtaaatacctctaaccataatcatcaaccaataaatttataatcaaaattaaccaacataatgcatgactcacataataattaacat |
200 |
Q |
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| T |
304857 |
atatcatcaaccagtaaataactctaaccataatcatcaaccaataaatttataatcaaaattgaccaacataatgcatgacccacataataattaacat |
304956 |
T |
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| Q |
201 |
ttaaattaaac |
211 |
Q |
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| T |
304957 |
tttaattaaac |
304967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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