View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17945_low_32 (Length: 258)
Name: NF17945_low_32
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 22 - 246
Target Start/End: Original strand, 26964810 - 26965034
Alignment:
| Q |
22 |
caaggtgcatgtaatcctatcaatgctagacaataagtgaacatcaatcttccttcataaacaagaaaggaagatgcaatgcattcggtattctaaactc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26964810 |
caaggtgcatgtaatcctatcaatgctagacaataagtgaacatcaatcttccttcataaacaagaaaggaagatgcaatgcattcggtattctaaactc |
26964909 |
T |
|
| Q |
122 |
ccccaacccccnnnnnnntggaattggccttgagaaaagttgagtttataaagtccctcttaccctgtcactaccatctttctaatcagatgaccataat |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26964910 |
ccccaacccccaaaaaaatggaattggccttgagaaaagttgagtttataaagtccctcttaccctgtcactaccatctttctaatcagatgaccataat |
26965009 |
T |
|
| Q |
222 |
gaatgtacatctgatgttggatatt |
246 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
26965010 |
gaatgtacatctgatgttggatatt |
26965034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 27020103 - 27020180
Alignment:
| Q |
165 |
gtttataaagtccctcttaccc-tgtcactaccatctttctaatcagatgaccataatgaatgtacatctgatgttgg |
241 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| ||||| |||||| | ||||| ||||| ||||||||||| ||||| |
|
|
| T |
27020103 |
gtttatcaagtccctcttacccctgtcactatcatctacttaatcaaaagaccaaaatgactgtacatctgaggttgg |
27020180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University