View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17945_low_36 (Length: 253)

Name: NF17945_low_36
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17945_low_36
NF17945_low_36
[»] chr4 (13 HSPs)
chr4 (86-236)||(12473725-12473875)
chr4 (86-236)||(12528134-12528284)
chr4 (90-236)||(35869575-35869721)
chr4 (100-236)||(21260815-21260951)
chr4 (94-234)||(22343360-22343500)
chr4 (109-233)||(33249397-33249521)
chr4 (90-228)||(51811943-51812081)
chr4 (86-236)||(55590503-55590642)
chr4 (86-236)||(52910050-52910199)
chr4 (179-236)||(34829176-34829233)
chr4 (161-222)||(49999663-49999724)
chr4 (90-145)||(35781021-35781076)
chr4 (161-236)||(52012799-52012874)
[»] chr5 (10 HSPs)
chr5 (86-236)||(33858538-33858688)
chr5 (86-236)||(11607534-11607684)
chr5 (86-236)||(19357262-19357411)
chr5 (86-236)||(33271635-33271785)
chr5 (123-234)||(39570080-39570191)
chr5 (90-236)||(1826280-1826426)
chr5 (106-200)||(42148203-42148297)
chr5 (161-236)||(38010689-38010764)
chr5 (162-236)||(13086774-13086848)
chr5 (161-234)||(29989985-29990058)
[»] scaffold0519 (1 HSPs)
scaffold0519 (86-236)||(11216-11365)
[»] chr8 (8 HSPs)
chr8 (86-236)||(11254028-11254177)
chr8 (90-236)||(41179567-41179713)
chr8 (86-234)||(24337830-24337978)
chr8 (112-236)||(4708333-4708457)
chr8 (10-83)||(32019355-32019428)
chr8 (131-226)||(32825880-32825975)
chr8 (94-236)||(18168406-18168549)
chr8 (94-236)||(18631963-18632106)
[»] chr2 (10 HSPs)
chr2 (86-236)||(34392081-34392231)
chr2 (11-83)||(2758008-2758080)
chr2 (86-226)||(23863803-23863943)
chr2 (161-236)||(21603980-21604055)
chr2 (86-147)||(37357917-37357978)
chr2 (90-234)||(4779608-4779752)
chr2 (86-236)||(7381713-7381862)
chr2 (86-147)||(21606149-21606210)
chr2 (93-236)||(4775655-4775799)
chr2 (86-153)||(25275622-25275689)
[»] chr3 (14 HSPs)
chr3 (90-236)||(44380275-44380421)
chr3 (86-236)||(37742746-37742896)
chr3 (111-236)||(47426371-47426496)
chr3 (93-234)||(17466296-17466437)
chr3 (85-229)||(33509708-33509852)
chr3 (10-69)||(47955558-47955617)
chr3 (88-236)||(35094567-35094717)
chr3 (108-236)||(39498692-39498819)
chr3 (86-141)||(19619214-19619269)
chr3 (161-236)||(50934521-50934596)
chr3 (161-236)||(31187145-31187220)
chr3 (161-228)||(42664702-42664769)
chr3 (161-236)||(47186196-47186271)
chr3 (109-153)||(25859019-25859063)
[»] chr1 (7 HSPs)
chr1 (86-236)||(29119324-29119474)
chr1 (106-236)||(8462149-8462279)
chr1 (86-184)||(46435465-46435563)
chr1 (88-236)||(32676157-32676305)
chr1 (86-236)||(2569058-2569207)
chr1 (164-234)||(25161332-25161402)
chr1 (83-236)||(8809636-8809790)
[»] chr6 (4 HSPs)
chr6 (86-233)||(5403876-5404023)
chr6 (90-236)||(1211848-1211994)
chr6 (86-229)||(32644838-32644979)
chr6 (86-130)||(10503259-10503303)
[»] chr7 (7 HSPs)
chr7 (86-236)||(48250175-48250327)
chr7 (81-236)||(35341557-35341712)
chr7 (86-193)||(48072451-48072558)
chr7 (86-193)||(32694570-32694677)
chr7 (10-62)||(38095101-38095153)
chr7 (164-203)||(40856485-40856524)
chr7 (102-153)||(40856949-40857000)
[»] scaffold0229 (1 HSPs)
scaffold0229 (86-236)||(13005-13156)
[»] scaffold0032 (1 HSPs)
scaffold0032 (86-236)||(34215-34363)
[»] scaffold0263 (1 HSPs)
scaffold0263 (161-227)||(23174-23240)


Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 12473875 - 12473725
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||| ||||||||||     
T  12473875 atagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataaag 12473776  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||||||||||||||| || ||| ||||||||||||| ||||||||||||||    
T  12473775 taacattggtaggtggcacactctaattggccaatggtatataccattggt 12473725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 12528284 - 12528134
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||| ||||||||||     
T  12528284 atagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataaag 12528185  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||||||||||||||| || ||| ||||||||||||| ||||||||||||||    
T  12528184 taacattggtaggtggcacactctaattggccaatggtatataccattggt 12528134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 35869575 - 35869721
Alignment:
Q  90 cacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataac 189  Q
    ||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||       ||||||||||||| ||| |||| | ||||    
T  35869575 cacttgtctaccataatggtatataccattgttcaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttatatagtaac 35869674  T
Q  190 attggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||||||||||| || | ||||||||| ||||| ||||||||||||||    
T  35869675 attggtaggtggcacattataattggtcaatggtatataccattggt 35869721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 21260951 - 21260815
Alignment:
Q  100 ccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggt 199  Q
    ||||||| ||||||| |||| | ||||||||||||| |||||||||||||||||       ||||||||||||| ||| |||||| ||||||||||||||    
T  21260951 ccataatggtatataacattacccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggt 21260852  T
Q  200 gacatactataattggccaatgatatataccattggt 236  Q
    |||| ||| |||||||||||||||||||| |||||||    
T  21260851 gacacactctaattggccaatgatatatatcattggt 21260815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 94 - 234
Target Start/End: Complemental strand, 22343500 - 22343360
Alignment:
Q  94 tgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattg 193  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||       ||||||||||||| ||| |||||| ||||||||    
T  22343500 tgtgtaccataatggtatatatcattgttcaattagaatgtgtcatgtggcacatcctttaaaataatatatcaaataaagcatttataaagtaacattg 22343401  T
Q  194 gtaggtgacatactataattggccaatgatatataccattg 234  Q
     ||| ||||| ||| ||||||| ||||||||||||||||||    
T  22343400 atagatgacacactctaattggtcaatgatatataccattg 22343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 109 - 233
Target Start/End: Original strand, 33249397 - 33249521
Alignment:
Q  109 tatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggtgacatacta 208  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||       ||||||||||||| ||| |||||| |||||||||||||||||| |||     
T  33249397 tatatatcattgctcaattagattgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaagtaacattggtaggtgacacactc 33249496  T
Q  209 taattggccaatgatatataccatt 233  Q
    ||||||||||||  |||||||||||    
T  33249497 taattggccaattgtatataccatt 33249521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 228
Target Start/End: Complemental strand, 51812081 - 51811943
Alignment:
Q  90 cacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataac 189  Q
    ||||||| || |||||| ||||||||||||   ||||||||||||||||  |||||||||||||       ||||||||| |||  || |||||| ||||    
T  51812081 cacttgtatatcataatggtatataccattatccaattagaatgtgtcacatggcacaccctttaaaaaaatatatcaaaaaaaaaatttataaagtaac 51811982  T
Q  190 attggtaggtgacatactataattggccaatgatatata 228  Q
    ||||||||||| |||||| |||||||||||| |||||||    
T  51811981 attggtaggtggcatactctaattggccaataatatata 51811943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 55590642 - 55590503
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    |||||||||| |||||||||| |||||| ||||||| |||||||||||||||| |||||||| |||||       ||||||||           |||||     
T  55590642 atagcacttgcgtaccataatggtatattccattgcccaattagaatgtgtcacgtggcacatcctttaaaaaagtatatcaa-----------ataaag 55590554  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||||||    
T  55590553 taacattggtaggtgacacactataattgatcaatgatatataccattggt 55590503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 52910050 - 52910199
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    ||||||||| |||||||| || ||||||||||||| ||||||||  |||| || |||||| ||| |||       | ||||||||||| ||| ||||||     
T  52910050 atagcacttatgtaccattatggtatataccattgatcaattagggtgtgccacgtggcataccttttaatttttt-tatcaaataaagcatttataaag 52910148  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||| ||||||||||| || ||| ||||||||||||| |||||| |||||||    
T  52910149 taatattggtaggtggcacactttaattggccaatggtatataacattggt 52910199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 34829176 - 34829233
Alignment:
Q  179 tataaaataacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    |||||| |||||||||||||||||| ||| |||||||||| ||||||||| |||||||    
T  34829176 tataaagtaacattggtaggtgacacactttaattggccattgatatatatcattggt 34829233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 49999663 - 49999724
Alignment:
Q  161 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatga 222  Q
    ||||||||||||| ||| |||||||||||||||||| |||||| ||| |||||| |||||||    
T  49999663 tatatcaaataaagcatttataaaataacattggtatgtgacacactctaattgaccaatga 49999724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 35781076 - 35781021
Alignment:
Q  90 cacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggca 145  Q
    |||||| |||||||||| |||||||||||||| ||||||||||||| || ||||||    
T  35781076 cacttgcgtaccataatggtatataccattgcccaattagaatgtgccacgtggca 35781021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 52012874 - 52012799
Alignment:
Q  161 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||||||||||||| ||| |||||| ||||||||||| ||| || ||| | ||||| ||||| |||||| |||||||    
T  52012874 tatatcaaataaaacatttataaagtaacattggtatgtggcacacttttattggtcaatgttatataacattggt 52012799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 33858538 - 33858688
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||       ||||||||||||| ||| ||||||     
T  33858538 atagcacttgtgtaccataatggtatataccattgcccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataaag 33858637  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||||||||||||||| || ||||||||||| ||||||||||||| ||||||    
T  33858638 taacattggtaggtggcacactataattggtcaatgatatatactattggt 33858688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 11607534 - 11607684
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    |||||||||||||||||||||  ||||||||||||  ||||||||||||| |  ||||||||||||||       ||||||||||||| ||| ||||||     
T  11607534 atagcacttgtgtaccataatgatatataccattgtccaattagaatgtggcccgtggcacaccctttaaaaaagtatatcaaataaaacatttataaag 11607633  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||| ||||||||||| || ||||||||||| ||||| ||||||||||||||    
T  11607634 taatattggtaggtggcacactataattggtcaatggtatataccattggt 11607684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 19357262 - 19357411
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    ||||||||||||||||||||| ||||||| |||||  |||||||||||||||| |||| ||| |||||       ||||||||||||| ||| ||||||     
T  19357262 atagcacttgtgtaccataatggtatatatcattgtccaattagaatgtgtcacgtgggacatcctttaaaaaa-tatatcaaataaagcatttataaag 19357360  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||| ||||||||||| || ||| ||||||||||||| ||||||||||||||    
T  19357361 taatattggtaggtggcacactctaattggccaatggtatataccattggt 19357411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 33271785 - 33271635
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    ||||||||| ||||||||||| |||||||| ||||| ||||||||||||| || ||||| || |||||       ||||||||||||| ||| ||| ||     
T  33271785 atagcacttatgtaccataatggtatatactattgcccaattagaatgtgccacgtggcgcatcctttaaaaaaatatatcaaataaagcatttatcaag 33271686  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    |||||||| ||| ||||| ||| |||||||||||||||||||| |||||||    
T  33271685 taacattgatagatgacacactctaattggccaatgatatatatcattggt 33271635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 234
Target Start/End: Original strand, 39570080 - 39570191
Alignment:
Q  123 caattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatga 222  Q
    |||||||||| ||||| ||||||||||||||       ||||||||||||| ||| |||||| |||||||||||||||||| ||| |||||||||||||     
T  39570080 caattagaatatgtcaggtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatgg 39570179  T
Q  223 tatataccattg 234  Q
    ||||||||||||    
T  39570180 tatataccattg 39570191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 1826426 - 1826280
Alignment:
Q  90 cacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataac 189  Q
    |||||||||| ||||||  |||||| ||||| ||||||| |||||| |||||||||||  ||||       ||||||||||||| |||||| ||| |||     
T  1826426 cacttgtgtatcataatgatatatatcattgttcaattaaaatgtgccatgtggcacatactttaaaaaaatatatcaaataaagcatctacaaagtaat 1826327  T
Q  190 attggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    |||||||||||||| ||| |||||| |||||| ||||||||||||||    
T  1826326 attggtaggtgacacactctaattgaccaatggtatataccattggt 1826280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 42148297 - 42148203
Alignment:
Q  106 tagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggtg 200  Q
    ||||||||||||||| ||||||||||||||  | |||| |||||||||       ||||||||||||| ||| |||||| |||||||||||||||    
T  42148297 tagtatataccattgttcaattagaatgtgcaacgtggtacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggtg 42148203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 38010689 - 38010764
Alignment:
Q  161 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    |||||||||||||  || |||||| ||||||||||| ||| || ||| | ||||||||||| |||||| |||||||    
T  38010689 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggt 38010764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 13086848 - 13086774
Alignment:
Q  162 atatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||||||||||||  || |||||||||||||||||| ||| || ||| | ||||| ||||| |||||| |||||||    
T  13086848 atatcaaataaaatatttataaaataacattggtatgtggcacactcttattggtcaatgttatataacattggt 13086774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 29990058 - 29989985
Alignment:
Q  161 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattg 234  Q
    ||||||||||||| ||| |||||| ||||||||||| ||| || ||| | ||||| ||||| |||||| |||||    
T  29990058 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattg 29989985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 11365 - 11216
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||       ||||||||||||| ||| ||||||     
T  11365 atagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataaag 11266  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    |||||||||||||||  ||||||||| ||| |||||||||||| |||||||    
T  11265 taacattggtaggtggtatactataa-tggtcaatgatatatatcattggt 11216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 11254028 - 11254177
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||       ||||||||||||| ||| ||||||     
T  11254028 atagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataaag 11254127  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    |||||||||||||||  ||||||||| ||| |||||||||||| |||||||    
T  11254128 taacattggtaggtggtatactataa-tggtcaatgatatatatcattggt 11254177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 41179567 - 41179713
Alignment:
Q  90 cacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataac 189  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||| || ||       ||||| ||||||| ||| |||||| ||||    
T  41179567 cacttgtgtaccataatggtatataccattgcccaattagaatgtgccatgtggcacatccattaaaaaaatatattaaataaaacatttataaagtaac 41179666  T
Q  190 attggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    || ||||||||||| ||| |||||||||||||||||||| |||||||    
T  41179667 atcggtaggtgacacactttaattggccaatgatatatatcattggt 41179713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 86 - 234
Target Start/End: Original strand, 24337830 - 24337978
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||  ||||||||||||||||       ||||||||||||| ||||||||||     
T  24337830 atagcacttgtgtaccataatggtatataccattgtccaattagaatgtgctatgtggcacaccctttaaaaatatatatcaaataaagcatctataaag 24337929  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccattg 234  Q
    |||||||||||| || || ||| |||||| || ||| ||||||||||||    
T  24337930 taacattggtagatggcacactctaattgaccgatggtatataccattg 24337978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 4708333 - 4708457
Alignment:
Q  112 ataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggtgacatactataa 211  Q
    ||||||||||  |||||||||||| || ||||||||||||||       ||||||||||||| ||| |||||| |||||||||||||||||| ||| |||    
T  4708333 ataccattgcctaattagaatgtgccacgtggcacaccctttaaaaatatatatcaaataaaacatttataaagtaacattggtaggtgacacactttaa 4708432  T
Q  212 ttggccaatgatatataccattggt 236  Q
    |||||  ||||||||| ||||||||    
T  4708433 ttggcgcatgatatatgccattggt 4708457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 32019355 - 32019428
Alignment:
Q  10 attattcttcatcctcttgaatttggtttatctagtttttcaacctagaatttaagtttctatcacttcacttc 83  Q
    |||||||||||||||||| |||||||||||||||||||||||||  ||||||| ||||||||||| ||||||||    
T  32019355 attattcttcatcctcttcaatttggtttatctagtttttcaacaaagaatttcagtttctatcaattcacttc 32019428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 32825880 - 32825975
Alignment:
Q  131 atgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatata 226  Q
    |||||||||||| |||| |||||       ||||||||||||| ||  ||||||||||||||| || |||||||||| ||||||||||||| ||||    
T  32825880 atgtgtcatgtgacacaaccttttaaaaaatatatcaaataaaacacatataaaataacattgatatgtgacatactctaattggccaatggtata 32825975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 236
Target Start/End: Complemental strand, 18168549 - 18168406
Alignment:
Q  94 tgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnn-tatatcaaataaatcatctataaaataacatt 192  Q
    ||||||||||||| |||||||  ||| |  ||||||| ||||||| |||||||| |||||        |||||||||||||  || |||||| ||| |||    
T  18168549 tgtgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagatt 18168450  T
Q  193 ggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||||||||  | ||| ||||||  ||||||||||||||||||||    
T  18168449 ggtaggtgggacactctaattgatcaatgatatataccattggt 18168406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 236
Target Start/End: Complemental strand, 18632106 - 18631963
Alignment:
Q  94 tgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnn-tatatcaaataaatcatctataaaataacatt 192  Q
    ||||||||||||| |||||||  ||| |  ||||||| ||||||| |||||||| |||||        |||||||||||||  || |||||| ||| |||    
T  18632106 tgtgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagatt 18632007  T
Q  193 ggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||||||||  | ||| ||||||  ||||||||||||||||||||    
T  18632006 ggtaggtgggacactctaattgatcaatgatatataccattggt 18631963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 34392081 - 34392231
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    ||||||||||||||||||||| |||||||||||||  |||||||| |||| |||||||||||||||||       ||||||||||||| ||| ||||||     
T  34392081 atagcacttgtgtaccataatggtatataccattgtccaattagattgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatttataaag 34392180  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||| ||||||||||| || ||| ||||||||||||| ||||||||||||||    
T  34392181 taagattggtaggtggcacactctaattggccaatggtatataccattggt 34392231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 2758080 - 2758008
Alignment:
Q  11 ttattcttcatcctcttgaatttggtttatctagtttttcaacctagaatttaagtttctatcacttcacttc 83  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  2758080 ttattcttcatcctcttgaatttggtttatctagtttttcaacttagaatttcagtttctatcaattcacttc 2758008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 23863803 - 23863943
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    |||||||| ||||||||||||  |||||| |||||  ||||||||||||| |||||||||||||||||       ||||||||||||| ||| ||||||     
T  23863803 atagcactagtgtaccataatgatatatatcattgtccaattagaatgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaag 23863902  T
Q  186 taacattggtaggtgacatactataattggccaatgatata 226  Q
    ||||||||||||||| || ||| |||||| ||||| |||||    
T  23863903 taacattggtaggtggcacactctaattgaccaataatata 23863943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 21604055 - 21603980
Alignment:
Q  161 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||||||||||||| ||| |||||| |||||||||||||||| | ||||||||||| ||||| ||||||||||||||    
T  21604055 tatatcaaataaaacatttataaagtaacattggtaggtgatacactataattggtcaatggtatataccattggt 21603980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 37357917 - 37357978
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcaca 147  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||||||    
T  37357917 atagcacttgtgtatcataatagtatataccattgtccaattagaatgtgtcacgtggcaca 37357978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 234
Target Start/End: Complemental strand, 4779752 - 4779608
Alignment:
Q  90 cacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataac 189  Q
    |||||||||| |||||| |||||||||||||  |||||||||||||||| ||| |||| |||||       |||||||||||||  || |||||| ||||    
T  4779752 cacttgtgtatcataatggtatataccattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaagtatttataaagtaac 4779653  T
Q  190 attggtaggtgacatactataattggccaatgatatataccattg 234  Q
    |||| |||| | || ||||||| ||  ||||| ||||||| ||||    
T  4779652 attgttaggcggcacactataagtgatcaatggtatatactattg 4779608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 7381862 - 7381713
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    |||| ||||| |||| ||||| |||||||| ||||| |||||| |||||||||  || |||| |||||       |||||||||||||  || ||||||     
T  7381862 atagaacttgcgtactataatggtatatactattgcccaattaaaatgtgtcacatgacacatcctttaaaaaa-tatatcaaataaagaatttataaag 7381764  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    |||||||||||| || || ||| ||||||||||||  ||||||||||||||    
T  7381763 taacattggtagatggcacactctaattggccaatagtatataccattggt 7381713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 21606210 - 21606149
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcaca 147  Q
    ||||||||| |||| |||||| |||||||||||||  |||||||||||||||| ||||||||    
T  21606210 atagcacttctgtatcataatggtatataccattgtccaattagaatgtgtcacgtggcaca 21606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 236
Target Start/End: Complemental strand, 4775799 - 4775655
Alignment:
Q  93 ttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatc-atctataaaataacat 191  Q
    |||||||||||||| |||||||||||||  |||||| | |||| ||||||||||| |||||       ||||| ||||||| | ||  ||||| ||| ||    
T  4775799 ttgtgtaccataatggtatataccattgtccaattaaattgtgccatgtggcacatcctttaaaaaaatatattaaataaaacaattaataaagtaagat 4775700  T
Q  192 tggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    |||||| ||| | | | |||||||||||| ||||||| |||||||    
T  4775699 tggtagatgagacattctaattggccaataatatatatcattggt 4775655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 25275622 - 25275689
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacacccttt 153  Q
    ||||||||| |||| |||||| ||||||| |||||  |||||||||||| ||| |||||||| |||||    
T  25275622 atagcacttctgtatcataatggtatatatcattgtccaattagaatgtatcacgtggcacatccttt 25275689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 44380421 - 44380275
Alignment:
Q  90 cacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataac 189  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||||| ||||||||||||||       ||||||||||||| ||| |||||| |||     
T  44380421 cacttgtgtaccataatggtatataccattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaagcatttataaagtaat 44380322  T
Q  190 attggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    |||| ||||||||| ||||||||||| ||||  ||||||||||||||    
T  44380321 attgataggtgacacactataattggtcaatagtatataccattggt 44380275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 37742896 - 37742746
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    |||||||||||||| |||||| |||||||||||||| |||||| |||||| || ||||||||| ||||       ||||||||||||| |||   |||      
T  37742896 atagcacttgtgtaacataatggtatataccattgcccaattataatgtgccacgtggcacactctttaaaaaaatatatcaaataaagcattggtaatg 37742797  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||||||||||||||| |||||| |||||| |||||||||||||||||||||    
T  37742796 taacattggtaggtggcatactctaattgaccaatgatatataccattggt 37742746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 236
Target Start/End: Complemental strand, 47426496 - 47426371
Alignment:
Q  111 tataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggtgacatactata 210  Q
    ||||||||||| ||||||||||||  |||||||||||||||||       ||||||||||||| |||||||||| |||||||| ||||||||| ||| ||    
T  47426496 tataccattgcccaattagaatgtaccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaagtaacattgataggtgacacactcta 47426397  T
Q  211 attggccaatgatatataccattggt 236  Q
    ||||||||||| ||||||| ||||||    
T  47426396 attggccaatggtatatactattggt 47426371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 234
Target Start/End: Complemental strand, 17466437 - 17466296
Alignment:
Q  93 ttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacatt 192  Q
    ||||||||| |||| ||||||||||||||||| ||||| ||||  | |||||| |||||||       |||||||| |||||||| |||||| |||||||    
T  17466437 ttgtgtaccgtaatggtatataccattgctcagttagattgtggtacgtggcataccctttaaaaaaatatatcaactaaatcatttataaagtaacatt 17466338  T
Q  193 ggtaggtgacatactataattggccaatgatatataccattg 234  Q
    | ||||||||| ||| |||||| |||||||||||||||||||    
T  17466337 gataggtgacacactctaattgaccaatgatatataccattg 17466296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 229
Target Start/End: Complemental strand, 33509852 - 33509708
Alignment:
Q  85 aatagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaa 184  Q
    |||||||||||||||| ||||| ||||||| |||||   |||||||||||| ||||||||||| |||||       || |||||||||| ||||||||||    
T  33509852 aatagcacttgtgtacaataatggtatatatcattgtctaattagaatgtgccatgtggcacatcctttaaaaaaatacatcaaataaagcatctataaa 33509753  T
Q  185 ataacattggtaggtgacatactataattggccaatgatatatac 229  Q
     ||| ||||||||||| || ||| ||||||| |||||||||||||    
T  33509752 gtaatattggtaggtggcacactctaattggtcaatgatatatac 33509708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 47955558 - 47955617
Alignment:
Q  10 attattcttcatcctcttgaatttggtttatctagtttttcaacctagaatttaagtttc 69  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  47955558 attattcttcatcctcttgaatttggtttatctattttttcaacctagaatttcagtttc 47955617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 35094717 - 35094567
Alignment:
Q  88 agcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaata 187  Q
    |||| |||||||||||||| |||| || |||||  |||||||||||||||| ||| |||| |||||       |||||||||||||  || |||||| ||    
T  35094717 agcatttgtgtaccataatggtatgtatcattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaaatatttataaagta 35094618  T
Q  188 acattggtaggtgacata--ctataattggccaatgatatataccattggt 236  Q
    ||||||||||||| ||||  |||||||| | ||||| ||||||||| ||||    
T  35094617 acattggtaggtggcatactctataattagtcaatggtatataccactggt 35094567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 236
Target Start/End: Original strand, 39498692 - 39498819
Alignment:
Q  108 gtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggtgacatact 207  Q
    |||||||| |||||||||||||||||||||| |||||||| |||||       ||||| |||||||  || ||||||||||||| | ||||||||| |||    
T  39498692 gtatatactattgctcaattagaatgtgtcacgtggcacatccttt-aaaaattatattaaataaaatatttataaaataacatcgataggtgacacact 39498790  T
Q  208 ataattggccaatgatatataccattggt 236  Q
     |||||| ||||| ||||||| |||||||    
T  39498791 ttaattgaccaataatatatatcattggt 39498819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 19619269 - 19619214
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgt 141  Q
    ||||||| ||||||||||||| |||||||||||||| |||||| ||||||||||||    
T  19619269 atagcacatgtgtaccataatggtatataccattgcccaattaaaatgtgtcatgt 19619214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 50934596 - 50934521
Alignment:
Q  161 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||||||||||||  ||| |||||| ||||||||||| ||| || ||| ||||||||||||| ||||||||||||||    
T  50934596 tatatcaaataatgcatttataaagtaacattggtaagtggcacactctaattggccaatggtatataccattggt 50934521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 31187145 - 31187220
Alignment:
Q  161 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||||||||||||| ||| |||||| ||||||||||| ||| || ||| | ||||| ||||| |||||| |||||||    
T  31187145 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggt 31187220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 42664769 - 42664702
Alignment:
Q  161 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatata 228  Q
    ||||||||||||| ||| |||||||||||||||||| ||| || ||| | ||||| ||||| ||||||    
T  42664769 tatatcaaataaaacatttataaaataacattggtatgtggcacactcttattggtcaatgttatata 42664702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 47186271 - 47186196
Alignment:
Q  161 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    |||||||||||||  || |||||| ||||||||||| ||| || ||| | ||||||||||| |||||| |||||||    
T  47186271 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggt 47186196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 25859063 - 25859019
Alignment:
Q  109 tatataccattgctcaattagaatgtgtcatgtggcacacccttt 153  Q
    |||||| |||||  |||||||| ||||||||||||||||||||||    
T  25859063 tatataacattggccaattagagtgtgtcatgtggcacacccttt 25859019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 29119324 - 29119474
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    |||||| |||||||||||||  |||||||| ||||| ||||||||||||| |||||||||||||||||       ||||||||||||| ||||||||||     
T  29119324 atagcatttgtgtaccataagggtatatacaattgcccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaag 29119423  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||||| || |||||| || ||| ||||||||||||| ||||||||||||||    
T  29119424 taacaatgataggtggcacactctaattggccaatggtatataccattggt 29119474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 8462279 - 8462149
Alignment:
Q  106 tagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataacattggtaggtgacata 205  Q
    |||||||||||||||  |||||| ||||||||| ||||||| ||||||       ||||| ||||||| ||| |||||||||||||||||||||| || |    
T  8462279 tagtatataccattgtccaattaaaatgtgtcacgtggcacgccctttaaaaaagtatattaaataaaacatttataaaataacattggtaggtggcaca 8462180  T
Q  206 ctataattggccaatgatatataccattggt 236  Q
    |||||||||  ||||||||||||||||||||    
T  8462179 ctataattgatcaatgatatataccattggt 8462149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 184
Target Start/End: Original strand, 46435465 - 46435563
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaa 184  Q
    |||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||       ||||||||||||| ||||||||||    
T  46435465 ataggacttgtgtaccataatggtatataccattgcccaattagaatgtgtcatgtgacacaccctttaaaaatatatatcaaataaagcatctataaa 46435563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 32676305 - 32676157
Alignment:
Q  88 agcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaata 187  Q
    |||| |||||||| ||||| |||||||||||||  |||||||| |||| |||||||||||  ||||       ||||||||||||| ||| |||||| ||    
T  32676305 agcatttgtgtactataatggtatataccattgtccaattagattgtgccatgtggcacatgctttaaaaaaatatatcaaataaagcatttataaagta 32676206  T
Q  188 acattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    |||||||||||||    | | ||||||||||||| ||||||||||||||    
T  32676205 acattggtaggtggtgcattctaattggccaatggtatataccattggt 32676157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 2569207 - 2569058
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    |||||||||||||| ||||||  ||||||| |||||  |||||||||||| ||  |||||||||||||       ||||||||||||| |||   |||      
T  2569207 atagcacttgtgtaacataatgatatatactattgcctaattagaatgtgccacatggcacaccctttaaaaaa-tatatcaaataaagcattggtaatg 2569109  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||||||||||||||| || ||| |||||||| |||||||||||||||||||    
T  2569108 taacattggtaggtggcacactctaattggcaaatgatatataccattggt 2569058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 25161402 - 25161332
Alignment:
Q  164 atcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatataccattg 234  Q
    |||||||||| ||| |||||| |||||||| |||||| || ||| ||||||| ||||| ||||||||||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattg 25161332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 236
Target Start/End: Original strand, 8809636 - 8809790
Alignment:
Q  83 cgaatagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnn-tatatcaaataaatcatctat 181  Q
    ||||||||||||||||||||| ||  |||||| ||||   ||||||   |||| |||||||||||| ||||        ||||||||||||| ||| |||    
T  8809636 cgaatagcacttgtgtaccattatgttatataacattagccaattaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttat 8809735  T
Q  182 aaaataacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||| ||||||||||| ||| || ||| | ||||| ||||| |||||| |||||||    
T  8809736 aaagtaacattggtacgtggcacactcttattggtcaatgttatataacattggt 8809790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 86 - 233
Target Start/End: Original strand, 5403876 - 5404023
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||  || ||||||       ||||||||||||| ||||||||||     
T  5403876 atagcacttgtgtaccataatggtatataccattgtccaattagaatgtgtcatgtgatacgccctttaaaaaaatatatcaaataaaacatctataaag 5403975  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccatt 233  Q
    ||||||||||||||| || ||| ||| || ||||| ||||||||||||    
T  5403976 taacattggtaggtggcagactctaactgaccaataatatataccatt 5404023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 1211848 - 1211994
Alignment:
Q  90 cacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaataac 189  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| || ||||||||||||||       ||||||||||||| |||| ||||| ||||    
T  1211848 cacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaccctttaaaaaaatatatcaaataaagcatcgataaagtaac 1211947  T
Q  190 attggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||||  ||||| || ||  ||||| ||||||| ||||||||||||||    
T  1211948 attgaaaggtggcacacactaattagccaatggtatataccattggt 1211994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 229
Target Start/End: Original strand, 32644838 - 32644979
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||       |||| ||||||||  || | ||||     
T  32644838 atagcacttgtgtac-ataatggtatataccattgttcaattagattgtatcatgtggcacaccctttaaaaaaatataacaaataaagtat-tttaaag 32644935  T
Q  186 taacattggtaggtgacatactataattggccaatgatatatac 229  Q
    ||||||| |||||||||| ||  |||||||||||||||||||||    
T  32644936 taacatttgtaggtgacacaccttaattggccaatgatatatac 32644979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 10503259 - 10503303
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattaga 130  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||    
T  10503259 atagcacttgtgtaccataatggtatataccattgtccaattaga 10503303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 48250327 - 48250175
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtca--tgtggcacaccctttnnnnnnntatatcaaataaatcatctataa 183  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||| ||  ||| ||| |||||||        |||||||||||| |||||||||    
T  48250327 atagcacttgtgtaccataatggtatataccattgtccaattagaatgtgacacatgtagcataccctttaaaaaaaaatatcaaataaagcatctataa 48250228  T
Q  184 aataacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    | ||||||||||||||| || ||| |||||| ||||||||||||| |||||||    
T  48250227 agtaacattggtaggtggcacactctaattgaccaatgatatatatcattggt 48250175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 236
Target Start/End: Complemental strand, 35341712 - 35341557
Alignment:
Q  81 ttcgaatagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatcta 180  Q
    |||| ||| ||||| | |||||||||  |||||| |||||  |||||||||||||||| ||||||||||||||       ||||||||||||| ||| ||    
T  35341712 ttcggataacacttatctaccataatgatatatatcattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacattta 35341613  T
Q  181 taaaataacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    |||| ||||||||||||||| || ||||||||||| ||||| |||||| |||||||    
T  35341612 taaagtaacattggtaggtggcacactataattggtcaatggtatatatcattggt 35341557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 48072558 - 48072451
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||||       || ||||||||||  || |||||||    
T  48072558 atagcacttgtgtaccataatggtatataccattgcccaattagaatgtgccacgtggcacaccctttaaaaaaatacatcaaataaaatatttataaaa 48072459  T
Q  186 taacattg 193  Q
    ||||||||    
T  48072458 taacattg 48072451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 32694570 - 32694677
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    ||||||||||||||| ||||| ||||||||||||||  ||||||||||||||| ||||||||||||||       |||||||||||||  || ||||||     
T  32694570 atagcacttgtgtactataatggtatataccattgcctaattagaatgtgtcacgtggcacaccctttaaaaaaatatatcaaataaagaatttataaag 32694669  T
Q  186 taacattg 193  Q
    ||||||||    
T  32694670 taacattg 32694677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 38095101 - 38095153
Alignment:
Q  10 attattcttcatcctcttgaatttggtttatctagtttttcaacctagaattt 62  Q
    |||||||||||||||||||||||||||||||| | |||||||||||| |||||    
T  38095101 attattcttcatcctcttgaatttggtttatccaatttttcaacctaaaattt 38095153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 40856524 - 40856485
Alignment:
Q  164 atcaaataaatcatctataaaataacattggtaggtgaca 203  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  40856524 atcaaataaaacatctataaaataacattggtaggtgaca 40856485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 40857000 - 40856949
Alignment:
Q  102 ataatagtatataccattgctcaattagaatgtgtcatgtggcacacccttt 153  Q
    ||||| ||||||| |||||  |||||||||||||||||||||||||||||||    
T  40857000 ataatggtatatatcattgtccaattagaatgtgtcatgtggcacacccttt 40856949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 13005 - 13156
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcac-accctttnnnnnnntatatcaaataaatcatctataaa 184  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||||||| || ||||||| |||||||       ||||||||||||| |||| |||||    
T  13005 atagcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaaccctttaaaaaaatatatcaaataaagcatcgataaa 13104  T
Q  185 ataacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
     ||||||||  ||||| || ||  ||||| ||||||| ||||||||||||||    
T  13105 gtaacattgaaaggtggcacacactaattagccaatggtatataccattggt 13156  T

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Target: scaffold0032 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 34363 - 34215
Alignment:
Q  86 atagcacttgtgtaccataatagtatataccattgctcaattagaatgtgtcatgtggcacaccctttnnnnnnntatatcaaataaatcatctataaaa 185  Q
    |||||| |||||||||||||  ||||||| ||||   |||||||||||||||| ||| ||||||||||       |||||||||||||  || ||||||     
T  34363 atagcatttgtgtaccataag-gtatataacattatccaattagaatgtgtcacgtgacacaccctttaaaaaa-tatatcaaataaaatatttataaag 34266  T
Q  186 taacattggtaggtgacatactataattggccaatgatatataccattggt 236  Q
    ||| ||||||| ||| || ||| |||||||||||| |||||||||||||||    
T  34265 taatattggtaagtggcacactctaattggccaataatatataccattggt 34215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 23174 - 23240
Alignment:
Q  161 tatatcaaataaatcatctataaaataacattggtaggtgacatactataattggccaatgatatat 227  Q
    |||||||||||||  || |||||| ||| ||||||||||| || ||| |||||||||||||||||||    
T  23174 tatatcaaataaaatatttataaagtaaaattggtaggtggcacactctaattggccaatgatatat 23240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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