View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17945_low_4 (Length: 553)
Name: NF17945_low_4
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 54277940 - 54277713
Alignment:
| Q |
19 |
aatcccttcagactttccaatgtttctcttcatcctaataaaccctttctcaccccactttgctccccatgaattcttcactataatgtaatccaaaccc |
118 |
Q |
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| T |
54277940 |
aatcccttcagactttccaatgtttctcttcatcctaataaaccctttctcaccccactttgctccccatgaattcttcactataatgtaatccaaaccc |
54277841 |
T |
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| Q |
119 |
tttgatgtaccatatccaacggctgacacaccatgatctagctcacttccacaatgtccatcaaacacaccctacaaatggtagttaaataatcagttca |
218 |
Q |
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| T |
54277840 |
tttgatgtaccatatccaacggctgacacaccatgatctagctcacttccacaatgtccatcaaacacaccctacaaatggtagttaaataatcagttca |
54277741 |
T |
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| Q |
219 |
tacaattccattaagattagattcaccc |
246 |
Q |
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| T |
54277740 |
tacaattccattaagattagattcaccc |
54277713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 307 - 545
Target Start/End: Complemental strand, 54277652 - 54277414
Alignment:
| Q |
307 |
catactccactatagaactggaaatctctgcctgaagcctctatggccacactgagtggttgattggcaagtgccttcaataagctttgttcattatttt |
406 |
Q |
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| T |
54277652 |
catactccactatagaactggaaatctctgcctgaagcctctatggccacactgagtggttgattggcaagtgccttcaataagctttgttcattatttt |
54277553 |
T |
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| Q |
407 |
gtggcacgtcatgatatccattaatagtcacaacctcacttacttcctggtgnnnnnnnccaatgaaagttatgttacttataactttagtatgaaacaa |
506 |
Q |
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| T |
54277552 |
gtggcacgtcatgatatccattaatagtcacaacctcacttacttcctggtgaaacaaaccaatgaaagttatgttacttataactttagtatgaaacaa |
54277453 |
T |
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| Q |
507 |
tatgttttagattgaatctatgtacctttttcatctcac |
545 |
Q |
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| T |
54277452 |
tatgttttagattgaatctatgtacctttttcatctcac |
54277414 |
T |
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