View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17945_low_47 (Length: 218)
Name: NF17945_low_47
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 33538383 - 33538203
Alignment:
| Q |
22 |
gagcgacctcttcatcatcttccattcttcatagataaacaacaaaattaagtccataataaaacaataaccttgtattgacagttctactaatgctata |
121 |
Q |
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| T |
33538383 |
gagcgacctcttcatcatcttccattcttcatagataaacaacaaaattaagtccataataaaacaataaccttgtattgacagttctactaatgctata |
33538284 |
T |
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| Q |
122 |
aacattaaaatggctaggctggnnnnnnnngttaaccaaaccgtttgattaagatggctaggcatgtagattattattctt |
202 |
Q |
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| T |
33538283 |
aacataaaaatggctaggctggttttttttgttaaccaaaccgtttgattaagatggctaggcatgtagattattattctt |
33538203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 46404842 - 46404880
Alignment:
| Q |
164 |
gtttgattaagatggctaggcatgtagattattattctt |
202 |
Q |
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| T |
46404842 |
gtttgattaaaatggctaggcatgtatattattattctt |
46404880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 23971917 - 23971963
Alignment:
| Q |
22 |
gagcgacctcttcatcatcttccattcttcatagataaacaacaaaa |
68 |
Q |
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| T |
23971917 |
gagcgacttcttcatcatcttccattcttcacagataaacaacaaaa |
23971963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 23972409 - 23972459
Alignment:
| Q |
152 |
gttaaccaaaccgtttgattaagatggctaggcatgtagattattattctt |
202 |
Q |
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| T |
23972409 |
gttaaccaaactatttgattaaaatggctaggcatgtatattattattctt |
23972459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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