View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17945_low_48 (Length: 214)
Name: NF17945_low_48
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_low_48 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 14434707 - 14434883
Alignment:
| Q |
20 |
tcgtactataagatatgatgcataataattattgaaaatgatgtactactactattgagtgaagtagaaaa-aatatttaccacaagataaatgagtgaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14434707 |
tcgtactataagatatgatgcataataattattgaaaatgatgtactactactattgagtgaagtagaaaaaaatatttaccacaagataaatgagtgaa |
14434806 |
T |
|
| Q |
119 |
gacaagagtatggtgttgaatcgaccaagataagaatcagctatgaagccaccaagcaaagggaatagtgaggagac |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14434807 |
gacaagagtatggtgttgaatcgaccaagataagaatcagctatgaagccaccaagcaaagggaatagtgaggagac |
14434883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 4278745 - 4278696
Alignment:
| Q |
134 |
ttgaatcgaccaagataagaatcagctatgaagccaccaagcaaagggaa |
183 |
Q |
| |
|
||||||||||||||||| || ||||| ||||| ||||||||||||||||| |
|
|
| T |
4278745 |
ttgaatcgaccaagatatgagtcagcaatgaaaccaccaagcaaagggaa |
4278696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University