View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17945_low_50 (Length: 205)
Name: NF17945_low_50
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_low_50 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 313119 - 313290
Alignment:
| Q |
16 |
actcttataaacatttgaagtaaacatgatgatctaatgataggtgacctaacacacgctccttcacattcatgattggacatctgaaaagtgatacaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||| |||| |||| |
|
|
| T |
313119 |
actcttataaacatttgaagtaaacatggtgatctaatagtaggtgacctaacacgcgc-ccttcacgttcatgattggacatctgaaaaatgatccaag |
313217 |
T |
|
| Q |
116 |
tggttcaacaattattcttacataagaggtccgagaggcaccttctaaggatgcttcgtttgtcccttaagtt |
188 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
313218 |
tggttcaacaattattattacataagaggtccgagaggcaccttctaaggatgcttcgtttgtcccttaagtt |
313290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University