View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17945_low_6 (Length: 524)
Name: NF17945_low_6
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 12 - 507
Target Start/End: Complemental strand, 4257675 - 4257180
Alignment:
| Q |
12 |
atgaaccaaacttctgtggatcaactctgtcaaatattcctctccaacttcctccaaagattttcccacttcatgtttaacaaacccctctgctatccat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4257675 |
atgaaccaaacttctgtggatcaactctgtcaaatattcctctccaacttcctccaaagattttcccacttcatgtttaacaaacccctctgctatccat |
4257576 |
T |
|
| Q |
112 |
tgccgaatcaaccttgaactccgaattgagtaatcttctgggtatataccaaaatacaagacgcatgacttcaaataatgtggcaagtcatcataactca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4257575 |
tgccgaatcaaccttgaactccgaattgagtaatcttctgggtatataccaaaatacaagacacatgacttcaaataatgtggcaagtcatcataactca |
4257476 |
T |
|
| Q |
212 |
tgcctaaaattcttgttatattagctaaatgtggattatggtctaactccgaacttagattttggcatagttttttccactcagaaacagttttatcttt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4257475 |
tgcctaaaattcttgttatattagctaaatgtggattacggtctaactccgaacttagattttggcatagttttttccactcagaaacagttttatcttt |
4257376 |
T |
|
| Q |
312 |
agttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttcctcagacatatcttcgagctctggtggacaattt |
411 |
Q |
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| T |
4257375 |
agttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttccttagacatatcttcgagctctggtggacaattt |
4257276 |
T |
|
| Q |
412 |
ccactgaaaccaaatcgaaacgccttgttacaaatgagttcccatgatttgtttggagacaagggttgcaacttgtgcacttgaacaaccgaatct |
507 |
Q |
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| T |
4257275 |
ccactgaaaccaaatcgaaacgccttgttacaaatgagttcccatgatttgtttggagacaagggttgcaacttgtgcacttgaacaaccgaatct |
4257180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 22620436 - 22620542
Alignment:
| Q |
16 |
accaaacttctgtggatcaactctgtcaaatattcctctccaacttcctccaaagattttcccacttcatgtttaacaaacccctctgctatccattgcc |
115 |
Q |
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||||||||||| |||||||||||||| || ||| | ||| ||||||| ||||||| || ||| ||| | ||| |||||||| || ||||||||||||| |
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| T |
22620436 |
accaaacttctatggatcaactctgttaagtatccttctgcaacttcttccaaagtattccccctttcttcttttacaaacccttcagctatccattgcc |
22620535 |
T |
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| Q |
116 |
gaatcaa |
122 |
Q |
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||||||| |
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| T |
22620536 |
gaatcaa |
22620542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 377
Target Start/End: Original strand, 3310081 - 3310171
Alignment:
| Q |
287 |
tccactcagaaacagttttatctttagttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttc |
377 |
Q |
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|||||||||| | |||||| |||| |||||||| |||||||| || ||||||||||| || |||| || ||||||||||||||||||| |
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| T |
3310081 |
tccactcagacatggttttagcttttgttgacaaaagacctccaatggccacaattgccagtggtagtcctccacatttttgaacaatttc |
3310171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 386
Target Start/End: Original strand, 3220915 - 3221018
Alignment:
| Q |
283 |
tttttccactcagaaacagttttatctttagttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttcctcag |
382 |
Q |
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|||| ||||||| ||| |||||| ||| ||||| || ||||| || || ||||||||||| || ||||| || |||||||||||||||||||||| | |
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| T |
3220915 |
ttttcccactcaaaaatggttttagattttgttgataaaagaccaccaatggccacaattgccagtggtaatcctccacatttttgaacaatttcctcgg |
3221014 |
T |
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| Q |
383 |
acat |
386 |
Q |
| |
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|||| |
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|
| T |
3221015 |
acat |
3221018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 377
Target Start/End: Original strand, 3321694 - 3321770
Alignment:
| Q |
301 |
gttttatctttagttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttc |
377 |
Q |
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||||||||||| |||||||| |||||||| || ||||||||||| || |||| | ||||||||| ||||||||| |
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| T |
3321694 |
gttttatcttttgttgacaaaagacctccaatggccacaattgccagtggtagttctccacattttttaacaatttc |
3321770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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