View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17945_low_7 (Length: 517)
Name: NF17945_low_7
Description: NF17945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17945_low_7 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0026 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 161 - 517
Target Start/End: Original strand, 7130911 - 7131267
Alignment:
| Q |
161 |
acttttgtaatcccatgtgtcatcttgtcccatatatcattagtgttttcttgtggctatccaaaagccccctctaagatcttgggttgaaaatattttg |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7130911 |
acttttgtaatcccatgtgtcatcttgtcccatataacattagtgttttcttgtggctatccaaaagccccctctaagatcttgggttgaaaatattttg |
7131010 |
T |
|
| Q |
261 |
gttttcactcttcaaatgcaagcacttggaaaaagtttgtttgcataaaatataaacaaagaaagtttggaaatttcagagataaacagacatgttggga |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7131011 |
gttttcactcttcaaatgcaagcacttggaaaaagtttgtttgcataaaatataaacaaagaaagtttggaaatttcagagataaatagacatgttggga |
7131110 |
T |
|
| Q |
361 |
ttaggtttcataattgatttcattaacgcataattaacttatgattcctcgctctgttaatatatgtaataacatatggatccgaaagtggtttgtgatt |
460 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7131111 |
ttaggtttcataattgatttcattaatgcataattaacttatgattcctcgctctgttaacatatgtaataacatatggatccgaaaatggtttgtgatt |
7131210 |
T |
|
| Q |
461 |
gtaaactcgaccctattcctagagagtagcatccacagatgaatttatcctcggtgt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7131211 |
gtaaactcgaccctattcctagagagtagcatccacagatgaatttatcctcggtgt |
7131267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 17083998 - 17083889
Alignment:
| Q |
51 |
tcatgtgtggaaggactgtcataaaatctatacatcttatttgatcaatggttt-aagttaatgggttcaagttggaccaatttttcggtgagtccaaat |
149 |
Q |
| |
|
||||||||||| ||||| | |||||| | |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| || |||||||| |
|
|
| T |
17083998 |
tcatgtgtggatggactaccgtaaaatatgtacatcttatttgatcaatggttttaagttaatgggtccaagttggaccaatttttcaatgggtccaaat |
17083899 |
T |
|
| Q |
150 |
taaacgccac |
159 |
Q |
| |
|
|||||||||| |
|
|
| T |
17083898 |
taaacgccac |
17083889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 38701152 - 38701069
Alignment:
| Q |
70 |
cataaaatctatacatcttatttgatcaatggtttaagttaatgggttcaagttggaccaatttttcggtgagtccaaattaaac |
154 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||||||| |
|
|
| T |
38701152 |
cataaaatctatacatcctatttgatcaatggtttaagttaattggttcaagttagaccaatttttcaatg-gtccaaattaaac |
38701069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 54385367 - 54385236
Alignment:
| Q |
22 |
agagatgctggaagagtgagagagtttaatcatgtgtggaaggactgtcataaaatctatacatcttatttgatcaatggtttaagttaatgggttcaag |
121 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||| ||| |||| |
|
|
| T |
54385367 |
agagatactggaagagtgagagagca-actcatgtgcagatggactactataaaatctatacatcttatttgatcaatggtctaagttaattggtccaag |
54385269 |
T |
|
| Q |
122 |
ttggaccaatttttcggtgagtccaaattaaac |
154 |
Q |
| |
|
||||| ||||||||| || ||||||||||||| |
|
|
| T |
54385268 |
ttggatcaatttttcaatgggtccaaattaaac |
54385236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 9257408 - 9257291
Alignment:
| Q |
161 |
acttttgtaatcccatgtgtcatcttgtcccatatatcattagtgttttcttgtggctatccaaaagccccctctaagatcttgggtt-gaaaatatttt |
259 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||| |||||||||||| || | ||||| |||| |||| |||||| |||||||||| ||| |||||| ||| |
|
|
| T |
9257408 |
acttttttaatctcatgtgccatcttgtcccacatatcattagtgcttccatgtggttatctaaaa-ccccctataagatcttgtgttggaaaatccttt |
9257310 |
T |
|
| Q |
260 |
ggttttcactcttcaaatg |
278 |
Q |
| |
|
| ||||||| ||| ||||| |
|
|
| T |
9257309 |
gtttttcacccttaaaatg |
9257291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 288
Target Start/End: Complemental strand, 78192 - 78080
Alignment:
| Q |
176 |
tgtgtcatcttgtcccatatatcattagtgttttcttgtggctatccaaaagccccctctaagatcttgggttgaaaatattttggttttcactcttcaa |
275 |
Q |
| |
|
|||| |||||||||||| |||||||| ||| |||||| || || || ||| | ||||||||||||||| |||| || | ||| ||||||| |||||| |
|
|
| T |
78192 |
tgtgccatcttgtcccacatatcatttgtgctttcttatgcctgaccgaaacctccctctaagatcttgtgttggaagattcttgtttttcacccttcaa |
78093 |
T |
|
| Q |
276 |
atgcaagcacttg |
288 |
Q |
| |
|
|||| | |||||| |
|
|
| T |
78092 |
atgccaccacttg |
78080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University