View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17946_high_4 (Length: 239)
Name: NF17946_high_4
Description: NF17946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17946_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 12852918 - 12852700
Alignment:
| Q |
3 |
ttattattctctttagatgcatcatcttgactaagttgtgaagcaacaaacttgtcaagaactctccaatcagtaacttgatcatcatcaaccatacctt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12852918 |
ttattattctctttagatgcatcatcttgactaagttgtgaagcaacaaacttgtcaagaactctccaatcagtaacttgatcatcatcaaccatacctt |
12852819 |
T |
|
| Q |
103 |
gttcaacattggaattgtttccatacatagcatgaaagttttgttgattaccactttgtataacttgttcttcttgtaagagcattgatgaaggaaacat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
12852818 |
gttcaacattggaattgtttccatacatagcatgaaagttttgttgattaccactttgtaagatttgttcttcttctaagagcactgatgaaggaaacat |
12852719 |
T |
|
| Q |
203 |
agaatttgaatgatctata |
221 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
12852718 |
aggatttgaatgatctata |
12852700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 42045403 - 42045451
Alignment:
| Q |
42 |
gaagcaacaaacttgtcaagaactctccaatcagtaacttgatcatcat |
90 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
42045403 |
gaagcaacaaacttgtcaagcactctccaatcagtaacttgttcatcat |
42045451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 8452298 - 8452248
Alignment:
| Q |
30 |
tgactaagttgtgaagcaacaaacttgtcaagaactctccaatcagtaact |
80 |
Q |
| |
|
||||| ||||| ||||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
8452298 |
tgactcagttgagaagccacaaacttatcaagagctctccaatcagtaact |
8452248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University