View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17946_high_6 (Length: 219)

Name: NF17946_high_6
Description: NF17946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17946_high_6
NF17946_high_6
[»] chr3 (2 HSPs)
chr3 (5-200)||(11229740-11229946)
chr3 (5-42)||(35656478-35656515)
[»] chr1 (3 HSPs)
chr1 (5-153)||(35634272-35634419)
chr1 (5-140)||(38668596-38668728)
chr1 (5-42)||(496968-497005)
[»] chr2 (4 HSPs)
chr2 (55-138)||(10056919-10057003)
chr2 (50-135)||(17387938-17388022)
chr2 (5-67)||(12758575-12758640)
chr2 (150-199)||(10057029-10057078)
[»] scaffold0369 (1 HSPs)
scaffold0369 (9-42)||(14408-14441)
[»] chr8 (1 HSPs)
chr8 (9-42)||(45193856-45193889)
[»] chr7 (6 HSPs)
chr7 (9-42)||(9939423-9939456)
chr7 (9-42)||(10027653-10027686)
chr7 (9-42)||(29241527-29241560)
chr7 (9-42)||(36698741-36698774)
chr7 (85-118)||(47359407-47359440)
chr7 (10-42)||(11327459-11327491)
[»] chr4 (4 HSPs)
chr4 (9-42)||(25887282-25887315)
chr4 (9-42)||(29690931-29690964)
chr4 (9-42)||(48694745-48694778)
chr4 (5-41)||(55809905-55809941)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 11229740 - 11229946
Alignment:
Q  5 ctatagagctgggcctccccaagtttggggcccaaaattattatgttttgatatataatgcacaaaacatgtttatatatacttgtagcattgtgaattt 104  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11229740 ctatagagctgggcctctccaattttggggcccaaaattattatgttttgatatataatgcacaaaacatgtttatatatacttgtagcattgtgaattt 11229839  T
Q  105 aacatcagtgaaggtgtggcccagtggtaaaacatgccagtgtta-----------tgcggtttgattcctattggtggctattgttcacattttactat 193  Q
    |||||||||||||||||||||||||||||||| |||| |||||||           ||||||||||||||||||| |||||| |||||||||||||||||    
T  11229840 aacatcagtgaaggtgtggcccagtggtaaaagatgctagtgttatgcgtgttgattgcggtttgattcctattgatggctactgttcacattttactat 11229939  T
Q  194 ttttcag 200  Q
    |||||||    
T  11229940 ttttcag 11229946  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 35656515 - 35656478
Alignment:
Q  5 ctatagagctgggcctccccaagtttggggcccaaaat 42  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  35656515 ctatagagctggacctccccaattttggggcccaaaat 35656478  T

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Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 35634272 - 35634419
Alignment:
Q  5 ctatagagctgggcctccccaagtttggggcccaaaattattatgttttgatatataatgcacaaaacatgtttatatatacttgtagcattgtgaattt 104  Q
    |||||||| ||||||| || || |||||||||||||| |||| |  ||||||||||||||||||||| || |||||||||| ||||||||||||||||||    
T  35634272 ctatagagttgggccttcctaattttggggcccaaaaatatttt--tttgatatataatgcacaaaaaatatttatatatatttgtagcattgtgaattt 35634369  T
Q  105 aacatcagt-gaaggtgtggcccagtggtaaaacatgccagtgttatgcg 153  Q
    |||||||||  |||| |||||| | |||||||||| || |||||||||||    
T  35634370 aacatcagtaaaaggcgtggcctaatggtaaaacacgctagtgttatgcg 35634419  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 38668596 - 38668728
Alignment:
Q  5 ctatagagctgggcctccccaagtttggggcccaaaattattatgttttgatatataatgcacaaaacatgtttatatatacttgtagcattgtgaattt 104  Q
    ||||||| ||||||||| |||| ||||||||||||  || ||   |||| |||||||||||| |||  || || ||||||||||||||||||||||||||    
T  38668596 ctatagaactgggcctctccaattttggggcccaagtttttt---ttttaatatataatgcataaacaatattaatatatacttgtagcattgtgaattt 38668692  T
Q  105 aacatcagtgaaggtgtggcccagtggtaaaacatg 140  Q
    | ||| || |||| ||||||| ||||||||||||||    
T  38668693 atcattagggaagttgtggcctagtggtaaaacatg 38668728  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 497005 - 496968
Alignment:
Q  5 ctatagagctgggcctccccaagtttggggcccaaaat 42  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  497005 ctatagagttgggcctccccaattttggggcccaaaat 496968  T

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Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 10056919 - 10057003
Alignment:
Q  55 atatataatgcacaaaacatgtttatatatacttgtagcattgtgaatttaacatcagtg-aaggtgtggcccagtggtaaaaca 138  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | ||||||||||    
T  10056919 atatataatgcacaaaaaatgtttatatatacttgtagcattgtgaatttaacatcggtgaaaggtgtggcctaatggtaaaaca 10057003  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 17388022 - 17387938
Alignment:
Q  50 ttttgatatataatgcacaaaacatgtttatatatacttgtagcattgtgaatttaacatcagtgaaggtgtggcccagtggtaaa 135  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |  ||| |||| |||||| |||||||||    
T  17388022 ttttgatatataatgcacaaaaaatgttaatatatacttgtagcattgtaaatttaata-gagtaaaggcgtggccgagtggtaaa 17387938  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 12758575 - 12758640
Alignment:
Q  5 ctatagagctgggcctccccaagtttggggcccaaaa---ttattatgttttgatatataatgcac 67  Q
    |||||||||||||||||||||| |||||||| |||||   || |||| |||| |||||||||||||    
T  12758575 ctatagagctgggcctccccaattttggggcgcaaaatactttttattttttaatatataatgcac 12758640  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 10057029 - 10057078
Alignment:
Q  150 tgcggtttgattcctattggtggctattgttcacattttactatttttca 199  Q
    |||||||||||||||| || ||||  |||||||||||||| |||||||||    
T  10057029 tgcggtttgattcctagtgatggcatttgttcacattttattatttttca 10057078  T

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Target: scaffold0369 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 14408 - 14441
Alignment:
Q  9 agagctgggcctccccaagtttggggcccaaaat 42  Q
    |||||||||||||||||| |||||||||||||||    
T  14408 agagctgggcctccccaattttggggcccaaaat 14441  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 45193889 - 45193856
Alignment:
Q  9 agagctgggcctccccaagtttggggcccaaaat 42  Q
    |||||||||||||||||| |||||||||||||||    
T  45193889 agagctgggcctccccaattttggggcccaaaat 45193856  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 9939456 - 9939423
Alignment:
Q  9 agagctgggcctccccaagtttggggcccaaaat 42  Q
    |||||||||||||||||| |||||||||||||||    
T  9939456 agagctgggcctccccaattttggggcccaaaat 9939423  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 10027653 - 10027686
Alignment:
Q  9 agagctgggcctccccaagtttggggcccaaaat 42  Q
    |||||||||||||||||| |||||||||||||||    
T  10027653 agagctgggcctccccaattttggggcccaaaat 10027686  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 29241560 - 29241527
Alignment:
Q  9 agagctgggcctccccaagtttggggcccaaaat 42  Q
    |||||||||||||||||| |||||||||||||||    
T  29241560 agagctgggcctccccaattttggggcccaaaat 29241527  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 36698774 - 36698741
Alignment:
Q  9 agagctgggcctccccaagtttggggcccaaaat 42  Q
    |||||||||||||||||| |||||||||||||||    
T  36698774 agagctgggcctccccaattttggggcccaaaat 36698741  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 47359440 - 47359407
Alignment:
Q  85 acttgtagcattgtgaatttaacatcagtgaagg 118  Q
    ||||||||||||||||||||||||| ||||||||    
T  47359440 acttgtagcattgtgaatttaacattagtgaagg 47359407  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 11327491 - 11327459
Alignment:
Q  10 gagctgggcctccccaagtttggggcccaaaat 42  Q
    ||||||||||||||||| |||||||||||||||    
T  11327491 gagctgggcctccccaattttggggcccaaaat 11327459  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 25887315 - 25887282
Alignment:
Q  9 agagctgggcctccccaagtttggggcccaaaat 42  Q
    |||||||||||||||||| |||||||||||||||    
T  25887315 agagctgggcctccccaattttggggcccaaaat 25887282  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 29690964 - 29690931
Alignment:
Q  9 agagctgggcctccccaagtttggggcccaaaat 42  Q
    |||||||||||||||||| |||||||||||||||    
T  29690964 agagctgggcctccccaattttggggcccaaaat 29690931  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 48694745 - 48694778
Alignment:
Q  9 agagctgggcctccccaagtttggggcccaaaat 42  Q
    |||||||||||||||||| |||||||||||||||    
T  48694745 agagctgggcctccccaattttggggcccaaaat 48694778  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 55809905 - 55809941
Alignment:
Q  5 ctatagagctgggcctccccaagtttggggcccaaaa 41  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  55809905 ctatagagctgggcctccccaattttagggcccaaaa 55809941  T

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