View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17946_low_2 (Length: 370)
Name: NF17946_low_2
Description: NF17946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17946_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 180 - 359
Target Start/End: Original strand, 48414732 - 48414911
Alignment:
| Q |
180 |
catgaacctgtgaataaaacttgcaagcatattagcctagtattttgcaattaaggatacggatctgattcacgacgattcagcttgctggataactctt |
279 |
Q |
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| T |
48414732 |
catgaacttgtgaataaaacttgcaagcatattagcctagtattttgcaattaaggatacggatctgattcacgacgattcagcttgctggataactctt |
48414831 |
T |
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| Q |
280 |
taccatgaatcctaagactcgattcatctatgtaactggcatgctggatcattcgcccccttctgtctcttccatcatat |
359 |
Q |
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| T |
48414832 |
taccatgaatcctaagactcggttcatctatgtaactggcatgctggatcattcgcccccttctgtctcttccatcatat |
48414911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 48414571 - 48414674
Alignment:
| Q |
19 |
atgaatagcatgcaatccagacatacagggtatcatacaacaccatttaagtaactcatttaccaaatacccgattcacagctttcttccgtgcataatg |
118 |
Q |
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| T |
48414571 |
atgaatagcatgcaatccagacatacagggtatcatacaacaccatttaagtaactcatttaccaaatacccgattcacagctttcttccgtgcataatg |
48414670 |
T |
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| Q |
119 |
taac |
122 |
Q |
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|||| |
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| T |
48414671 |
taac |
48414674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 218 - 358
Target Start/End: Original strand, 44774451 - 44774591
Alignment:
| Q |
218 |
agtattttgcaattaaggatacggatctgattcacgacgattcagcttgctggataactctttaccatgaatcctaagactcgattcatctatgtaactg |
317 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44774451 |
agtatttcacaattgaggatacggatctgattcacgacgattcagcttgctggctacctctttaccatgaatcctaagactcggttcatctatgtaactg |
44774550 |
T |
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| Q |
318 |
gcatgctggatcattcgcccccttctgtctcttccatcata |
358 |
Q |
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| T |
44774551 |
gcatgctgaatcattggcccctttctgtctcttccatcata |
44774591 |
T |
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