View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17946_low_7 (Length: 233)
Name: NF17946_low_7
Description: NF17946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17946_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 43 - 223
Target Start/End: Complemental strand, 33533195 - 33533015
Alignment:
| Q |
43 |
caaagtgtgcttttaacaatccttcgcttctccactttctgaatttcttttgagatctttcctgcttcatttccagagatataggttgcattcttagcct |
142 |
Q |
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| T |
33533195 |
caaagtgtgcttttaacaatccttcgcttctccactttctgaatttcttttgagatctttcctgcttcatttccagagatataggttgcattcttagcct |
33533096 |
T |
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| Q |
143 |
tttttcccatcacttcaagtttgacctacaagtcaaattgaagaaataagaaagtggcaccatcaagtgttcatctcactc |
223 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33533095 |
tttttcccatcacttcaagtttgacctaccagtcaaattgaagaaataagaaagtggcaccatcaagtgttcagctcactc |
33533015 |
T |
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