View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17946_low_9 (Length: 217)
Name: NF17946_low_9
Description: NF17946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17946_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 38486418 - 38486215
Alignment:
| Q |
1 |
aagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486418 |
aagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttca |
38486319 |
T |
|
| Q |
101 |
agggacctggcaattttacacggtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486318 |
agggacctggcaattttacacggtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccct |
38486219 |
T |
|
| Q |
201 |
ccct |
204 |
Q |
| |
|
|||| |
|
|
| T |
38486218 |
ccct |
38486215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 30295459 - 30295375
Alignment:
| Q |
11 |
cctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaag |
95 |
Q |
| |
|
|||||||||||||||| ||||| | || || || |||||| |||| || || | |||||||||||| ||||| ||||||||||| |
|
|
| T |
30295459 |
cctggttcatatcaattgtttggagggcttcgccacgagtgtatattattgcattgttttgattttcaggcttcccttctccaag |
30295375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 30120817 - 30120632
Alignment:
| Q |
1 |
aagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttca |
100 |
Q |
| |
|
|||||||| ||||| ||||| || ||||| || | || |||||||||||||| ||||||||||| |||||||| || |||||||| || || || |||| |
|
|
| T |
30120817 |
aagtagttatcctgattcatgtctatagtctgcaaagcgtccccgcgagtgaagatgatggcgtgattttgattctcgggctttccctccccgagcttca |
30120718 |
T |
|
| Q |
101 |
agggacctggcaattttacacggtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttc |
186 |
Q |
| |
|
| ||||| |||| ||| || | ||||| ||| |||||| | |||| ||| || |||||||||||||| ||||| |||| |||||| |
|
|
| T |
30120717 |
atggacccggcagtttgactctgtatacttcaacctccttttccaactgctgatcatacttaacaaggacagagaaatactccttc |
30120632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 34191701 - 34191617
Alignment:
| Q |
11 |
cctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaag |
95 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| || || |||||||| || || || ||||| || || ||||||||||| ||||| |
|
|
| T |
34191701 |
cctgattcatatcaatagtttgaagtgcatcaccacgggtgaatattatcgcatgattttggttctcaggctttccttcaccaag |
34191617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University