View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17947_high_1 (Length: 639)
Name: NF17947_high_1
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_high_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 567; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 15 - 618
Target Start/End: Original strand, 40093306 - 40093909
Alignment:
| Q |
15 |
catcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctct |
114 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40093306 |
catcagaactatggagctttttttgacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctct |
40093405 |
T |
|
| Q |
115 |
cctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttattagtcttacatagttaatggagttaattcttttgatacaggttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093406 |
cctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttgttagtcttacatagttaatggagttaattcttttgatacaggttg |
40093505 |
T |
|
| Q |
215 |
gcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40093506 |
gcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggt |
40093605 |
T |
|
| Q |
315 |
aatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctactaaccaatg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093606 |
aatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctactaaccaatg |
40093705 |
T |
|
| Q |
415 |
tcatgcatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggcttgggtaaatg |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
40093706 |
tcatgcatgttgcattagacaaactttgatgctccatccggcagtaatccagttgtgattgacttcacagggatgggaaaaggcgaggcttgggtaaatg |
40093805 |
T |
|
| Q |
515 |
gacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagaggaccttttactcaaaccaaatgtca |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093806 |
gacaaagcattgggcgatactggcctacatatgttgcttcaaatgtcgattgcacagactcatgcaactacagaggaccttttactcaaaccaaatgtca |
40093905 |
T |
|
| Q |
615 |
catg |
618 |
Q |
| |
|
|||| |
|
|
| T |
40093906 |
catg |
40093909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 15 - 618
Target Start/End: Original strand, 40062654 - 40063278
Alignment:
| Q |
15 |
catcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctct |
114 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
40062654 |
catcagaactatggagctttttttgacagatggggagcggggatcaccggtccagtaacattgaaaggtttgaagaatggcaacaacactcttgatctct |
40062753 |
T |
|
| Q |
115 |
cctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagact------------atttattagtcttac---------atagttaatggagt |
193 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| || ||||||||||| |
|
|
| T |
40062754 |
cctctcagaagtggacatatcaggtcagtcttaacttttgatcaaagacttgatcaaagactatttattagtcttaatggagattgattgttaatggagt |
40062853 |
T |
|
| Q |
194 |
taattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaaca |
293 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||| ||| || |||||||||||||||| || |
|
|
| T |
40062854 |
taattctattgatacaggttggcctaaaaggtgaagatttaggtctgtccagtggaagttccgaaggttggaactcacagtctactttccctaagaatca |
40062953 |
T |
|
| Q |
294 |
accattgatttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaat |
393 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40062954 |
accattgatttggtacaaggtaattttattttcaatttattgtttccctttatataagttatggaatttcaaattaaaagaatgccactatatgaaaaat |
40063053 |
T |
|
| Q |
394 |
gttttttgctactaaccaatgtcatgcatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaa |
493 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40063054 |
gttttttggtactaaccaatgtcatacatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaa |
40063153 |
T |
|
| Q |
494 |
aaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagaggacc |
593 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40063154 |
aaggtgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagaggacc |
40063253 |
T |
|
| Q |
594 |
ttttactcaaaccaaatgtcacatg |
618 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
40063254 |
ttttactcaaaccaaatgtcacatg |
40063278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 600
Target Start/End: Original strand, 40081003 - 40081611
Alignment:
| Q |
15 |
catcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctct |
114 |
Q |
| |
|
||||||||||||||||| |||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40081003 |
catcagaactatggagccttttttgacacagtgggagcagggatcaccggtcccgtgatattgaaaggtttgaagaatggcaacaacactcttgatctct |
40081102 |
T |
|
| Q |
115 |
cctctcggaagtggacatatcaggtcagtcttcactttt-gatcgaagactatttattagtctt---------------------acatagttaatggag |
192 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | |||| ||||||| ||||||||||| |||| |||| |||||||||| |
|
|
| T |
40081103 |
cctctcggaagtggacatatcaggtcaatcttaaatttttgatcgaaaactatttattattctttctttatcactttaatggaatacattgttaatggag |
40081202 |
T |
|
| Q |
193 |
ttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaac |
292 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||| || |||||| ||||||||| | |
|
|
| T |
40081203 |
ttaattttttcgatacagattggcctaaaaggcgaagatttaggtctgtctagtggaagttctggagggtggaattcacagtctacttaccctaagaacc |
40081302 |
T |
|
| Q |
293 |
aaccattgatttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaa |
392 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||||| |
|
|
| T |
40081303 |
aaccattggtttggtacaaggtagttttattttcaatttattgtttcccttgatataagtaagggaatttcaaattaaggaaatgccactatatgaaaaa |
40081402 |
T |
|
| Q |
393 |
tgtttt-ttgctactaaccaatgtcatgcatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatggg |
491 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40081403 |
tgtttttttgctactaaccaatgtaatacatgttgcactagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatggg |
40081502 |
T |
|
| Q |
492 |
aaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagagga |
591 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
40081503 |
aaaaggtgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgtcgcttcaaatgccggttgcacagactcatgcaactatagagga |
40081602 |
T |
|
| Q |
592 |
ccttttact |
600 |
Q |
| |
|
|||| |||| |
|
|
| T |
40081603 |
ccttatact |
40081611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 430 - 545
Target Start/End: Complemental strand, 22012756 - 22012641
Alignment:
| Q |
430 |
tagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggc |
529 |
Q |
| |
|
||||| ||||||| |||||| ||||| ||||| || ||||| || |||||||||||||||||||||||||| |||||||| || ||||| |||||||||| |
|
|
| T |
22012756 |
tagacgaactttgttgctccctccggaagtaacccggttgcaatcgacttcacggggatgggaaaaggcgaagcttgggtgaacggacagagcattgggc |
22012657 |
T |
|
| Q |
530 |
gatactggcctacata |
545 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
22012656 |
gatactggccaacata |
22012641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 487 - 527
Target Start/End: Complemental strand, 44356214 - 44356174
Alignment:
| Q |
487 |
atgggaaaaggcgaggcttgggtaaatggacaaagcattgg |
527 |
Q |
| |
|
|||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
44356214 |
atggcaaaaggtgaagcttgggtaaatggacaaagcattgg |
44356174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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