View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17947_high_13 (Length: 313)
Name: NF17947_high_13
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 305
Target Start/End: Complemental strand, 44805220 - 44804935
Alignment:
| Q |
20 |
cggtccactgatgatgatttgattgaagtcatgtaacaagttgcagttctaaattttgtcattctcaaactttctatgtgtggagtttgcttgatctttt |
119 |
Q |
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| T |
44805220 |
cggtccactgatgatgatttgattgaagtcatgtaacaagttgcagttctaaattttgtcattctcaaactttctatgtgtggagtttgcttgatctttt |
44805121 |
T |
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| Q |
120 |
taggagtacagatgaaaattagatttcttcttgtgtggtctatttaatagctgttaatgaagaccaagctgtattgatgttatggtttgtttgttatggt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44805120 |
taggagtacagatgaaaattagatttcttcttgtgtggtccatttaatagctgttaatgaagaccaagctgtattgatgttatggtttgtttgttatggt |
44805021 |
T |
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| Q |
220 |
ttatactctatattttggttttattatattgtggaaactgcaatttgagataaatctgaatcttttgcaaattattatttcttctc |
305 |
Q |
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| T |
44805020 |
ttatactctatattttggttttattatattgtggaaactgcaatttgagataaatctgaatcttttgcaaattattatttcttctc |
44804935 |
T |
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