View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17947_high_17 (Length: 252)
Name: NF17947_high_17
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 91 - 245
Target Start/End: Complemental strand, 6463629 - 6463473
Alignment:
| Q |
91 |
aatcataagagttttcaaggtaatatatacgcacacacttggagta--tttgctttagacctttacaaattgctatatttgcttttatcttgagtaatta |
188 |
Q |
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| T |
6463629 |
aatcataagaattttcaaggtaatatatacgcacacacttggagtacatttgctttggacctttacaaattgctatatttgcttttatcttgagtaatta |
6463530 |
T |
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| Q |
189 |
agtaatcttgatagttaagttatgtctatttttctaccaccattttgatattttctt |
245 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6463529 |
agtaatctcgatagctaagttatgtctatttttctaccaccattttgatattttctt |
6463473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 6452917 - 6452871
Alignment:
| Q |
91 |
aatcataagagttttcaaggtaatatatacgcacacacttggagtat |
137 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
6452917 |
aatcataagaattttcaaggtaatatacacgcacacacttggagtat |
6452871 |
T |
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