View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17947_high_2 (Length: 629)
Name: NF17947_high_2
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_high_2 |
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| [»] scaffold1787 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 575; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 18 - 624
Target Start/End: Complemental strand, 44728803 - 44728197
Alignment:
| Q |
18 |
acctgcatctatcgaggaggaaaattcgccgccgcctcttcctgaaataacacttggaattgacattggcagatcaccatgctgtgtttctgtgtggaat |
117 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44728803 |
acctgcatctatcgaggaggaaaattcgtcgccgcctcttcctgaaataacacttggaattgacattggcagatcaccatgctgtgtttctgtgtggaat |
44728704 |
T |
|
| Q |
118 |
ggttccagagtggagatttggaaagaaagtataaatgagatgattaagagatatttcgaaactttcgatcatgtctttactgatggagctagtagtagca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44728703 |
ggttccagagtggagatttggaaagaaagtataaatgagatgattaagagatatttcgaaactttcgatcatgtctttactgatggagctagtagtagta |
44728604 |
T |
|
| Q |
218 |
acgtctcactctcccaagcgcatgaggatgcaatttccaacctgaaagacttgattagcgcacttttcaatgaaagtgccaatttcccatttctgatgca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44728603 |
acgtctcactctcccaagcgcatgaggatgcagtttccaacctgaaagacttgattagcgcacttttcaacgaaagtgccaatttcccatttctgatgca |
44728504 |
T |
|
| Q |
318 |
cactttggacattaagattcgtccttttgtagctgcatttgtgaacaaagtgtgcaaatcaaccactgcagtagaactccttggaaactttctggtgaat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44728503 |
cactttggacattaagattcgtccttttgtagctgcatttgtgaacaaagtgtgcaaatcaaccactgcagtagaactccttggaaactttctggtgaat |
44728404 |
T |
|
| Q |
418 |
ttaaaagaaatggctgaaactgaactgaaacaaccaataagaaatgtagtgtttattattccagtttcgttcagtcgattgcagcaaacccagatacgta |
517 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44728403 |
ttaaaagaaatggctgaaactgaactgaaacaacctataagaaatgtagtgtttattattccagtttcgttcagtcgattgcagcaaacccggatacgta |
44728304 |
T |
|
| Q |
518 |
tcgcttgtgagatggccggtctaaaagttatcagactgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaactgcatgcttctgcttc |
617 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44728303 |
tcgcttgtgagatggccggtctaaaagttattagactgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaactgcatgcttctgcttc |
44728204 |
T |
|
| Q |
618 |
atctcac |
624 |
Q |
| |
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|||||| |
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| T |
44728203 |
ttctcac |
44728197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 298 - 622
Target Start/End: Complemental strand, 42927529 - 42927205
Alignment:
| Q |
298 |
aatttcccatttctgatgcacactttggacattaagattcgtccttttgtagctgcatttgtgaacaaagtgtgcaaatcaaccactgcagtagaactcc |
397 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||| | |||||| ||| ||| |||| ||| | ||| ||||||||||||||||||| |
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| T |
42927529 |
aatttaccatttctgatgcacactttggacattaaggttcgtccttttattgctgcaattgcgaataaagcgtgtagatccaccactgcagtagaactcc |
42927430 |
T |
|
| Q |
398 |
ttggaaactttctggtgaatttaaaagaaatggctgaaactgaactgaaacaaccaataagaaatgtagtgtttattattccagtttcgttcagtcgatt |
497 |
Q |
| |
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||||||| ||||||||||| ||||| || ||||| | ||||| ||| |||||||| |||||||||| | |||||||||| |||| |||||| |
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| T |
42927429 |
ttggaaaatttctggtgaaattaaagttttcggttgaaattcgggtgaaaatacctataagaaaggtagtgtttactgttccagtttcattcactcgatt |
42927330 |
T |
|
| Q |
498 |
gcagcaaacccagatacgtatcgcttgtgagatggccggtctaaaagttatcagactgatgcctgaaccaacagcagtggctttgctttatgcacatcaa |
597 |
Q |
| |
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|| || |||||||||| ||||| || | ||| | ||| | | | | |||||||||| |||||| ||||||||||||| |||||||||| ||| |
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| T |
42927329 |
gcggcgaacccagatagaacgcgcttctgcgtgggctgatcttgatgatgttgaactgatgcctcaaccaatagcagtggctttgttttatgcacaacaa |
42927230 |
T |
|
| Q |
598 |
caactgcatgcttctgcttcatctc |
622 |
Q |
| |
|
|||||||| |||||||||| |||| |
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| T |
42927229 |
caactgcagacttctgcttcttctc |
42927205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 42927634 - 42927576
Alignment:
| Q |
58 |
cctgaaataacacttggaattgacattggcagatcaccatgctgtgtttctgtgtggaa |
116 |
Q |
| |
|
||||||||| || |||||||||||||||||| |||||||||| |||||||||||||||| |
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|
| T |
42927634 |
cctgaaatagcaattggaattgacattggcacatcaccatgccgtgtttctgtgtggaa |
42927576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 492
Target Start/End: Complemental strand, 47880004 - 47879940
Alignment:
| Q |
428 |
tggctgaaactgaactgaaacaaccaataagaaatgtagtgtttattattccagtttcgttcagt |
492 |
Q |
| |
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||||||||||| ||||||||| || ||||||||||||||||||| |||||||||| |||||| |
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| T |
47880004 |
tggctgaaactcaactgaaacgacggataagaaatgtagtgtttacagttccagtttccttcagt |
47879940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 553 - 600
Target Start/End: Original strand, 47842649 - 47842696
Alignment:
| Q |
553 |
ctgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaa |
600 |
Q |
| |
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||||||||| |||||||||||||||||||| | |||||||| |||||| |
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| T |
47842649 |
ctgatgcctcaaccaacagcagtggctttgttgtatgcacagcaacaa |
47842696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 554 - 617
Target Start/End: Complemental strand, 21354388 - 21354325
Alignment:
| Q |
554 |
tgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaactgcatgcttctgcttc |
617 |
Q |
| |
|
|||| ||| ||| ||||||||||||| || | |||||||| ||||||||||||||||||||||| |
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| T |
21354388 |
tgattcctcaactaacagcagtggctctgttgtatgcacaacaacaactgcatgcttctgcttc |
21354325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 21111423 - 21111362
Alignment:
| Q |
54 |
tcttcctgaaataacacttggaattgacattggcagatcaccatgctgtgtttctgtgtgga |
115 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||| |||| |||| |||||||| ||||||| |
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| T |
21111423 |
tcttgctgaaatagcaattggaattgacattggcacatcaacatgttgtgtttccgtgtgga |
21111362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 472
Target Start/End: Complemental strand, 21282753 - 21282672
Alignment:
| Q |
391 |
gaactccttggaaactttctggtgaatttaaaagaaatggctgaaactgaactgaaacaaccaataagaaatgtagtgttta |
472 |
Q |
| |
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|||||| ||||||| ||||||||| | |||| || ||||||||||| | ||| |||||||| |||| ||||||| |||||| |
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| T |
21282753 |
gaactcattggaaaatttctggtggaattaatagtaatggctgaaattcaaccaaaacaacctataaaaaatgtactgttta |
21282672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1787 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1787
Description:
Target: scaffold1787; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 371
Target Start/End: Original strand, 1274 - 1349
Alignment:
| Q |
296 |
ccaatttcccatttctgatgcacactttggacattaagattcgtccttttgtagctgcatttgtgaacaaagtgtg |
371 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||| ||| |||||| | || |||||||||| || |||||| |
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|
| T |
1274 |
ccaacttcccatttctgatgcacagcttggacattaaggttcacccttttattgccgcatttgtgatcagagtgtg |
1349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 39240938 - 39241023
Alignment:
| Q |
56 |
ttcctgaaataacacttggaattgacattggcagatcaccatgctgtgtttctgtgtggaatggttccagagtggagatttggaaa |
141 |
Q |
| |
|
||||||||||| || |||||||||| ||||||| |||| |||| |||| | || |||||||||||| ||||||||||| |||| |
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|
| T |
39240938 |
ttcctgaaatagcagttggaattgatattggcacctcacaatgcagtgtagcagtatggaatggttcccaagtggagattttgaaa |
39241023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 601
Target Start/End: Original strand, 39241416 - 39241497
Alignment:
| Q |
520 |
gcttgtgagatggccggtctaaaagttatcagactgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaac |
601 |
Q |
| |
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||||||| |||||| ||||| | ||| | || |||||||||||||||||||| ||||| ||| | |||||||| ||||||| |
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| T |
39241416 |
gcttgtgcgatggctggtcttcatgttcttaggctgatgcctgaaccaacagctgtggcattgttatatgcacagcaacaac |
39241497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 431 - 495
Target Start/End: Original strand, 39241337 - 39241401
Alignment:
| Q |
431 |
ctgaaactgaactgaaacaaccaataagaaatgtagtgtttattattccagtttcgttcagtcga |
495 |
Q |
| |
|
|||||||| | ||||||| ||||||||||||||| ||| ||| |||||||||| ||||||||| |
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| T |
39241337 |
ctgaaactcatctgaaacgaccaataagaaatgttgtgcttacagttccagtttcattcagtcga |
39241401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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