View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17947_high_23 (Length: 238)
Name: NF17947_high_23
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_high_23 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 44779919 - 44780138
Alignment:
| Q |
18 |
ttagctcggtccctgatgcacacttctcacgggctaggtctgaagggattcttgaagtagcttacaattttatgtaatgcaacgaaatctcaccttgata |
117 |
Q |
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| T |
44779919 |
ttagctcggtccctgatgcacacttctcacgggctaggtctga-gggattcttgaagtagcttacaattttatgaaatgcaacgaaatctcaccttgata |
44780017 |
T |
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| Q |
118 |
aagtgatttggttcattttcatgctatcattcaagaaacatttgtttgaacaattagttttgatcatgcatttattaataaatatagttaatttggtaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
44780018 |
aagtgatttggttcattttcatgctatcattcaagaaatatttgtttgaacaattagttttgatcatgcatttattaataaatatggttaattaggtaaa |
44780117 |
T |
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| Q |
218 |
attgtaatttttaacactacc |
238 |
Q |
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| T |
44780118 |
attgcaatttttaatactacc |
44780138 |
T |
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