View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17947_high_26 (Length: 220)
Name: NF17947_high_26
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_high_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 37162218 - 37162003
Alignment:
| Q |
1 |
caacttattcttacttctcacaataagaaacgaaacatgctggaggaagacttgactttaagtaagacttaatgggtagaaaatagttttaatattcnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37162218 |
caacttattcttacttctcacaataagaaacgaaacatgctggaggaagacttgactttaagtaagacttaatgggtagaaaatagttttaatattcttt |
37162119 |
T |
|
| Q |
101 |
nnnnnnnnnaaataccaaagattagatgttaatctttgaaataataaaagtaaattgttaatccatcaataatattattttaattcagtactggtctaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37162118 |
ttgttttttaaataccaaagattagatgttaatctttgaaataataaaagtaaattgttaatccatcaataatattattttaattcagtactggtctaat |
37162019 |
T |
|
| Q |
201 |
cttttcaaagcttcat |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37162018 |
cttttcaaagcttcat |
37162003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University